Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26480 - ( GRF12 (GENERAL REGULATORY FACTOR 12) protein binding / protein phosphorylated amino acid binding )
26 Proteins interacs with AT1G26480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.1010
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT1G78300 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1076
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.0823
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0197
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0822
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G10450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2268
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G09000 | PredictedPhylogenetic profile method | FSW = 0.5121
| Unknown | 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1) |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.1407
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G02520 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1724
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G65430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1207
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.1538
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT2G42590 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1878
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G38480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2380
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35160 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2817
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.1355
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G22300 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3753
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G16050 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6036
| Unknown | GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0855
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.1837
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.1901
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.1579
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1366
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G78220 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6259
| Unknown | GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G34760 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5168
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454