Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26630 - ( FBR12 (FUMONISIN B1-RESISTANT12) translation initiation factor )

18 Proteins interacs with AT1G26630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G39740

Predicted

in vivo

in vitro

two hybrid

Affinity Capture-MS

FSW = 0.0165

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G02740

Predicted

Affinity Capture-MS

FSW = 0.0606

Class C:

plasma membrane

ASPARTYL PROTEASE FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0056

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G38350Predicted

two hybrid

FSW = 0.0803

Unknown

HEDGEHOG RECEPTOR
AT3G62840Predicted

two hybrid

FSW = 0.1442

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LIKE-SM RIBONUCLEOPROTEIN CORE (INTERPROIPR001163) LIKE-SM RIBONUCLEOPROTEIN EUKARYOTIC AND ARCHAEA-TYPE CORE (INTERPROIPR006649) LIKE-SM RIBONUCLEOPROTEIN-RELATED CORE (INTERPROIPR010920) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE (TAIRAT2G476404) HAS 535 BLAST HITS TO 535 PROTEINS IN 164 SPECIES ARCHAE - 2 BACTERIA - 0 METAZOA - 239 FUNGI - 109 PLANTS - 78 VIRUSES - 0 OTHER EUKARYOTES - 107 (SOURCE NCBI BLINK)
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0195

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G06260

Predicted

two hybrid

FSW = 0.1023

Unknown

NUCLEOLAR PROTEIN-RELATED
AT2G47640

Predicted

two hybrid

FSW = 0.0263

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT5G17020

Predicted

in vitro

FSW = 0.0481

Unknown

XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR
AT5G38710

Predicted

two hybrid

FSW = 0.1465

Unknown

PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE
AT1G71220

Predicted

two hybrid

FSW = 0.0381

Unknown

EBS1 (EMS-MUTAGENIZED BRI1 SUPPRESSOR 1) UDP-GLUCOSEGLYCOPROTEIN GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT4G16420

Predicted

Affinity Capture-MS

FSW = 0.0052

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT5G05920

Predicted

two hybrid

two hybrid

in vitro

Affinity Capture-MS

FSW = 0.1498

Unknown

DHS (DEOXYHYPUSINE SYNTHASE)
AT5G28030

Predicted

two hybrid

FSW = 0.0426

Unknown

CYSTEINE SYNTHASE PUTATIVE / O-ACETYLSERINE (THIOL)-LYASE PUTATIVE / O-ACETYLSERINE SULFHYDRYLASE PUTATIVE
AT5G19350

Predicted

two hybrid

FSW = 0.0423

Unknown

RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0114

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G69410

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2783

Unknown

ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) TRANSLATION INITIATION FACTOR
AT1G13950

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1505

Unknown

ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454