Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26630 - ( FBR12 (FUMONISIN B1-RESISTANT12) translation initiation factor )
18 Proteins interacs with AT1G26630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G39740 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0165
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G02740 | PredictedAffinity Capture-MS | FSW = 0.0606
| Class C:plasma membrane | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0056
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G38350 | Predictedtwo hybrid | FSW = 0.0803
| Unknown | HEDGEHOG RECEPTOR |
AT3G62840 | Predictedtwo hybrid | FSW = 0.1442
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LIKE-SM RIBONUCLEOPROTEIN CORE (INTERPROIPR001163) LIKE-SM RIBONUCLEOPROTEIN EUKARYOTIC AND ARCHAEA-TYPE CORE (INTERPROIPR006649) LIKE-SM RIBONUCLEOPROTEIN-RELATED CORE (INTERPROIPR010920) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE (TAIRAT2G476404) HAS 535 BLAST HITS TO 535 PROTEINS IN 164 SPECIES ARCHAE - 2 BACTERIA - 0 METAZOA - 239 FUNGI - 109 PLANTS - 78 VIRUSES - 0 OTHER EUKARYOTES - 107 (SOURCE NCBI BLINK) |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G06260 | Predictedtwo hybrid | FSW = 0.1023
| Unknown | NUCLEOLAR PROTEIN-RELATED |
AT2G47640 | Predictedtwo hybrid | FSW = 0.0263
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT5G17020 | Predictedin vitro | FSW = 0.0481
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT5G38710 | Predictedtwo hybrid | FSW = 0.1465
| Unknown | PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE |
AT1G71220 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | EBS1 (EMS-MUTAGENIZED BRI1 SUPPRESSOR 1) UDP-GLUCOSEGLYCOPROTEIN GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT4G16420 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G05920 | Predictedtwo hybridtwo hybridin vitroAffinity Capture-MS | FSW = 0.1498
| Unknown | DHS (DEOXYHYPUSINE SYNTHASE) |
AT5G28030 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | CYSTEINE SYNTHASE PUTATIVE / O-ACETYLSERINE (THIOL)-LYASE PUTATIVE / O-ACETYLSERINE SULFHYDRYLASE PUTATIVE |
AT5G19350 | Predictedtwo hybrid | FSW = 0.0423
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G69410 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2783
| Unknown | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) TRANSLATION INITIATION FACTOR |
AT1G13950 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1505
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454