Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26690 - ( emp24/gp25L/p24 family protein )
83 Proteins interacs with AT1G26690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defectPhenotypic SuppressionSynthetic LethalitySynthetic Rescue | FSW = 0.0691
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1437
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.1282
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G09440 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0567
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT1G14010 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1127
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G05940 | Predictedinteraction prediction | FSW = 0.0318
| Unknown | CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G22845 | Predictedtwo hybridinteraction predictionGene fusion methodCo-expression | FSW = 0.0538
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0458
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0567
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G48170 | Predictedbiochemical | FSW = 0.1177
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G64190 | Predictedinterologs mapping | FSW = 0.1053
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0500
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G15450 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2348
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.0928
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.1497
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G18790 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT5G60540 | Predictedsynthetic growth defect | FSW = 0.2153
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT4G36490 | PredictedSynthetic Lethality | FSW = 0.1168
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0157
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G20090 | PredictedPhenotypic Enhancement | FSW = 0.0575
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT4G04340 | PredictedPhenotypic Enhancement | FSW = 0.1506
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G04750 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2363
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.1808
| Unknown | ATVAMP725 |
AT2G17520 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G21700 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1546
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G08720 | Predictedsynthetic growth defect | FSW = 0.0173
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT4G09800 | PredictedAffinity Capture-Western | FSW = 0.1056
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G06960 | Predictedsynthetic growth defect | FSW = 0.1261
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G28460 | PredictedPhenotypic Enhancement | FSW = 0.0679
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1654
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G60980 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1422
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G13560 | Predictedtwo hybridinteraction prediction | FSW = 0.0798
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.1109
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.1242
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.1511
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | PredictedPhenotypic Enhancement | FSW = 0.0889
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT1G69460 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1742
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G05710 | PredictedPhenotypic Suppression | FSW = 0.0190
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0194
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT3G13900 | Predictedbiochemical | FSW = 0.1264
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT4G17190 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1303
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G21370 | PredictedSynthetic Lethality | FSW = 0.1090
| Unknown | UNKNOWN PROTEIN |
AT1G10090 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1021
| Unknown | UNKNOWN PROTEIN |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1806
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G27080 | PredictedPhenotypic Enhancement | FSW = 0.0538
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G31170 | PredictedPhenotypic Enhancement | FSW = 0.0727
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G47830 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2082
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G57620 | PredictedAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1072
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.1070
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.0602
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G06483 | PredictedPhenotypic Enhancement | FSW = 0.0978
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G12200 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1037
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G13210 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1413
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G22290 | PredictedPhenotypic Enhancement | FSW = 0.2846
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1933
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G47290 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancement | FSW = 0.1862
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G47610 | PredictedSynthetic Lethality | FSW = 0.1162
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0536
| Unknown | UNKNOWN PROTEIN |
AT4G25950 | PredictedPhenotypic Enhancement | FSW = 0.0871
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G38250 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0942
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.2029
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G14180 | PredictedAffinity Capture-WesternPhenotypic EnhancementSynthetic Lethality | FSW = 0.1425
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G16980 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2487
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G20340 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic EnhancementSynthetic RescuePhenotypic Enhancementsynthetic growth defectSynthetic Lethality | FSW = 0.2262
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G45620 | PredictedPhenotypic EnhancementAffinity Capture-MSSynthetic RescuePhenotypic EnhancementAffinity Capture-WesternReconstituted Complextwo hybridAffinity Capture-MS | FSW = 0.2455
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G49970 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2504
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G54940 | PredictedPhenotypic Enhancement | FSW = 0.0662
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G60970 | PredictedPhenotypic Enhancement | FSW = 0.0401
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G03080 | Predictedsynthetic growth defect | FSW = 0.0390
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G05960 | PredictedSynthetic Lethality | FSW = 0.0155
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.0572
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G21460 | Predictedsynthetic growth defect | FSW = 0.1330
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G25585 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT3G43980 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0593
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29A) |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.1561
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G17860 | PredictedPhenotypic Suppression | FSW = 0.2919
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G38030 | PredictedSynthetic Rescue | FSW = 0.0571
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G21900 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1702
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G10780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1773
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G29070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1252
| Unknown | PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G09580 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0741
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454