Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26690 - ( emp24/gp25L/p24 family protein )

83 Proteins interacs with AT1G26690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G17360

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

Phenotypic Suppression

Synthetic Lethality

Synthetic Rescue

FSW = 0.0691

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.1437

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G20260

Predicted

Phenotypic Enhancement

FSW = 0.1282

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G09440

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT3G15710

Predicted

Phenotypic Enhancement

FSW = 0.0567

Unknown

SIGNAL PEPTIDASE PUTATIVE
AT1G14010

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1127

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G05940

Predicted

interaction prediction

FSW = 0.0318

Unknown

CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G22845

Predicted

two hybrid

interaction prediction

Gene fusion method

Co-expression

FSW = 0.0538

Unknown

EMP24/GP25L/P24 PROTEIN-RELATED
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0458

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0567

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G48170

Predicted

biochemical

FSW = 0.1177

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.0205

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT1G64190

Predicted

interologs mapping

FSW = 0.1053

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT2G45300

Predicted

Phenotypic Suppression

FSW = 0.0500

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G15450

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2348

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G51820

Predicted

Phenotypic Enhancement

FSW = 0.0928

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT1G48860

Predicted

Phenotypic Enhancement

FSW = 0.1497

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT3G18790

Predicted

Phenotypic Enhancement

FSW = 0.0244

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT5G60540

Predicted

synthetic growth defect

FSW = 0.2153

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT4G36490

Predicted

Synthetic Lethality

FSW = 0.1168

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0157

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G20090

Predicted

Phenotypic Enhancement

FSW = 0.0575

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT4G04340

Predicted

Phenotypic Enhancement

FSW = 0.1506

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G04750

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2363

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G32670

Predicted

Phenotypic Enhancement

FSW = 0.1808

Unknown

ATVAMP725
AT2G17520

Predicted

Phenotypic Enhancement

FSW = 0.0224

Unknown

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G21700

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1546

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT3G08720

Predicted

synthetic growth defect

FSW = 0.0173

Unknown

S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE
AT4G09800Predicted

Affinity Capture-Western

FSW = 0.1056

Unknown

RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G06960

Predicted

synthetic growth defect

FSW = 0.1261

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT1G28460

Predicted

Phenotypic Enhancement

FSW = 0.0679

Unknown

AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT4G25340

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1654

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G60980

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1422

Unknown

NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G13560

Predicted

two hybrid

interaction prediction

FSW = 0.0798

Unknown

AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT5G24090

Predicted

Synthetic Lethality

FSW = 0.1109

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT2G19980

Predicted

Phenotypic Enhancement

FSW = 0.1242

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.1511

Unknown

ARA6 GTP BINDING / GTPASE
AT3G07140

Predicted

Phenotypic Enhancement

FSW = 0.0889

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT1G69460

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1742

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G05710

Predicted

Phenotypic Suppression

FSW = 0.0190

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G67730

Predicted

two hybrid

FSW = 0.0194

Unknown

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT3G13900

Predicted

biochemical

FSW = 0.1264

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT4G17190

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1303

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G21370

Predicted

Synthetic Lethality

FSW = 0.1090

Unknown

UNKNOWN PROTEIN
AT1G10090

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1021

Unknown

UNKNOWN PROTEIN
AT1G11510

Predicted

synthetic growth defect

FSW = 0.1806

Unknown

DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G27080

Predicted

Phenotypic Enhancement

FSW = 0.0538

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G31170

Predicted

Phenotypic Enhancement

FSW = 0.0727

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G47830

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2082

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G57620

Predicted

Affinity Capture-MS

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1072

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G80710

Predicted

Phenotypic Enhancement

FSW = 0.1070

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G48100

Predicted

Phenotypic Enhancement

FSW = 0.0602

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G06483

Predicted

Phenotypic Enhancement

FSW = 0.0978

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G12200

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1037

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G13210

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1413

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G22290

Predicted

Phenotypic Enhancement

FSW = 0.2846

Unknown

UNKNOWN PROTEIN
AT3G24010

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1933

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G47290

Predicted

synthetic growth defect

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1862

Unknown

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT3G47610

Predicted

Synthetic Lethality

FSW = 0.1162

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G14000

Predicted

Synthetic Lethality

FSW = 0.0536

Unknown

UNKNOWN PROTEIN
AT4G25950

Predicted

Phenotypic Enhancement

FSW = 0.0871

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G38250

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0942

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G01770

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2029

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G14180

Predicted

Affinity Capture-Western

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1425

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G16980

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.2487

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G20340

Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

Synthetic Rescue

Phenotypic Enhancement

synthetic growth defect

Synthetic Lethality

FSW = 0.2262

Unknown

BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G45620

Predicted

Phenotypic Enhancement

Affinity Capture-MS

Synthetic Rescue

Phenotypic Enhancement

Affinity Capture-Western

Reconstituted Complex

two hybrid

Affinity Capture-MS

FSW = 0.2455

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G49970

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2504

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G54940

Predicted

Phenotypic Enhancement

FSW = 0.0662

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G60970

Predicted

Phenotypic Enhancement

FSW = 0.0401

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT3G03080

Predicted

synthetic growth defect

FSW = 0.0390

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G05960

Predicted

Synthetic Lethality

FSW = 0.0155

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G06460

Predicted

two hybrid

interaction prediction

FSW = 0.0572

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G21460

Predicted

synthetic growth defect

FSW = 0.1330

Unknown

ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G25585

Predicted

Affinity Capture-MS

FSW = 0.0401

Unknown

AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G43980Predicted

Phenotypic Enhancement

Synthetic Rescue

FSW = 0.0593

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29A)
AT3G53030

Predicted

synthetic growth defect

FSW = 0.1561

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT5G17860

Predicted

Phenotypic Suppression

FSW = 0.2919

Unknown

CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G38030

Predicted

Synthetic Rescue

FSW = 0.0571

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G21900

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1702

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G10780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1773

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G29070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1252

Unknown

PROTEIN TRANSMEMBRANE TRANSPORTER
AT1G09580

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.0741

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454