Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G26830 - ( ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) protein binding / ubiquitin-protein ligase )
58 Proteins interacs with AT1G26830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G06190 | Experimentalpull downReconstituted Complex | FSW = 0.0656
| Unknown | BPM2 (BTB-POZ AND MATH DOMAIN 2) PROTEIN BINDING |
AT3G62420 | Experimentalpull down | FSW = 0.0252
| Unknown | ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G63160 | Experimentalpull downReconstituted Complex | FSW = 0.0375
| Unknown | BT1 (BTB AND TAZ DOMAIN PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT1G64280 | Experimental | FSW = 0.0323
| Unknown | NPR1 (NONEXPRESSER OF PR GENES 1) PROTEIN BINDING / TRANSCRIPTION ACTIVATOR |
AT4G07670 | Experimental | FSW = 0.0155
| Unknown | PROTEASE-ASSOCIATED (PA) DOMAIN-CONTAINING PROTEIN |
AT5G20570 | Experimentaltwo hybridtwo hybridtwo hybridpull downAffinity Capture-Westernco-fractionationCo-fractionationtwo hybrid | FSW = 0.0744
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT4G02570 | Experimentalco-fractionationCo-fractionation | FSW = 0.0894
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT5G42970 | Experimentaltwo hybrid | FSW = 0.0849
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT1G78600 | Experimental | FSW = 0.0581
| Unknown | LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G26990 | Experimentaltwo hybridtwo hybrid | FSW = 0.0963
| Unknown | FUS12 (FUSCA 12) |
AT1G05690 | Experimentalpull downReconstituted Complex | FSW = 0.1129
| Unknown | BT3 (BTB AND TAZ DOMAIN PROTEIN 3) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT1G21780 | Experimentaltwo hybridtwo hybridtwo hybridpull downpull downReconstituted Complexco-fractionationCo-fractionation | FSW = 0.0484
| Unknown | BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT2G39760 | Experimentaltwo hybridpull downReconstituted Complex | FSW = 0.0679
| Unknown | BPM3 PROTEIN BINDING |
AT5G19000 | Experimentaltwo hybridpull downtwo hybridReconstituted Complextwo hybrid | FSW = 0.0633
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT1G01640 | Experimentalpull downReconstituted Complex | FSW = 0.0968
| Unknown | SPECKLE-TYPE POZ PROTEIN-RELATED |
AT5G48510 | Experimentalpull downReconstituted Complex | FSW = 0.0525
| Unknown | SPECKLE-TYPE POZ PROTEIN-RELATED |
AT3G48360 | Experimentalpull downReconstituted Complex | FSW = 0.0528
| Unknown | BT2 (BTB AND TAZ DOMAIN PROTEIN 2) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT4G08455 | Experimentaltwo hybrid | FSW = 0.0726
| Unknown | BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT3G51770 | ExperimentalReconstituted Complexcoimmunoprecipitation | FSW = 0.0159
| Unknown | ETO1 (ETHYLENE OVERPRODUCER 1) PROTEIN BINDING BRIDGING |
AT5G13060 | Experimentaltwo hybrid | FSW = 0.0187
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
AT4G37610 | ExperimentalReconstituted Complex | FSW = 0.0829
| Unknown | BT5 (BTB AND TAZ DOMAIN PROTEIN 5) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT3G43100 | ExperimentalReconstituted Complex | FSW = 0.0525
| Unknown | BT5 (BTB AND TAZ DOMAIN PROTEIN 5) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT3G22630 | PredictedAffinity Capture-Western | FSW = 0.0117
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G56310 | Predictedtwo hybridtwo hybrid | FSW = 0.0290
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT5G25780 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G22940 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE |
AT1G02980 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0813
| Unknown | CUL2 (CULLIN 2) UBIQUITIN PROTEIN LIGASE BINDING |
AT3G09840 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT2G02560 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0552
| Unknown | CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED) BINDING |
AT1G05120 | PredictedCo-purification | FSW = 0.0203
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G61890 | Predictedtwo hybrid | FSW = 0.0146
| Unknown | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.0141
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G20140 | Predictedtwo hybridtwo hybridtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic Lethalitytwo hybrid | FSW = 0.0430
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G71230 | Predictedbiochemical | FSW = 0.0781
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT3G61140 | Predictedbiochemical | FSW = 0.0764
| Unknown | FUS6 (FUSCA 6) |
AT3G42830 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.0299
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT5G20850 | Predictedtwo hybridtwo hybrid | FSW = 0.0051
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT4G24740 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT4G32660 | Predictedtwo hybrid | FSW = 0.0615
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G19400 | Predictedtwo hybrid | FSW = 0.0568
| Unknown | SMG7 |
AT5G27640 | Predictedtwo hybridtwo hybrid | FSW = 0.0097
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G41770 | Predictedtwo hybridtwo hybrid | FSW = 0.0122
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G11980 | Predictedin vivoin vitroAffinity Capture-MSbiochemical | FSW = 0.0219
| Unknown | RUB3 (UBIQUITIN-RELATED PROTEIN 3) |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT2G06040 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0363
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT4G10570 | PredictedAffinity Capture-Western | FSW = 0.0564
| Unknown | UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE |
AT4G27960 | PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G01720 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingReconstituted Complex | FSW = 0.0932
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT1G43900 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G16330 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G11260 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0290
| Unknown | SGT1B PROTEIN BINDING |
AT3G12760 | Predictedtwo hybridbiochemicalSynthetic Lethalitytwo hybrid | FSW = 0.0232
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK) |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0157
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT1G77050 | PredictedSynthetic Lethality | FSW = 0.0101
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G46210 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1318
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G69670 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2561
| Unknown | CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454