Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27040 - ( nitrate transporter putative )
110 Proteins interacs with AT1G27040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedSynthetic Lethality | FSW = 0.0443
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.0913
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.0409
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT4G12650 | PredictedPhenotypic Suppression | FSW = 0.0797
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLASMA MEMBRANE VACUOLE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G351601) HAS 983 BLAST HITS TO 980 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 434 FUNGI - 144 PLANTS - 228 VIRUSES - 0 OTHER EUKARYOTES - 177 (SOURCE NCBI BLINK) |
AT1G52190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G02040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3604
| Unknown | PTR2 (PEPTIDE TRANSPORTER 2) DIPEPTIDE TRANSPORTER/ HIGH AFFINITY OLIGOPEPTIDE TRANSPORTER/ NITRATE TRANSMEMBRANE TRANSPORTER/ PEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0315
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G40890 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | ATCLC-A (CHLORIDE CHANNEL A) ANION CHANNEL/ NITRATE TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT3G22890 | Predictedsynthetic growth defect | FSW = 0.1447
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.1509
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G48170 | PredictedColocalization | FSW = 0.1680
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1142
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G65430 | PredictedPhenotypic Suppression | FSW = 0.0761
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G11870 | PredictedPhenotypic Suppression | FSW = 0.0377
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT3G58610 | PredictedPhenotypic Enhancement | FSW = 0.0500
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT5G25400 | PredictedPhenotypic Enhancement | FSW = 0.0600
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT1G16880 | PredictedAffinity Capture-MS | FSW = 0.0694
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0992
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G56050 | PredictedPhenotypic Suppression | FSW = 0.1276
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT2G43030 | PredictedPhenotypic Suppression | FSW = 0.0524
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT5G56350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0339
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G04340 | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT2G32670 | PredictedPhenotypic Suppression | FSW = 0.1133
| Unknown | ATVAMP725 |
AT1G12110 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2965
| Unknown | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G33440 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3413
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G53960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3178
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G69850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0099
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT3G54140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3604
| Unknown | PTR1 (PEPTIDE TRANSPORTER 1) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT1G59740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2785
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G21680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3029
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G16180 | PredictedPhylogenetic profile method | FSW = 0.3169
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G33090 | PredictedPhenotypic Suppression | FSW = 0.0372
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G07180 | PredictedCo-purificationReconstituted Complex | FSW = 0.0307
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT4G09570 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT1G21700 | PredictedPhenotypic Enhancement | FSW = 0.0731
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G63780 | PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | IMP4 |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0569
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G52250 | PredictedPhenotypic Suppression | FSW = 0.0706
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1968
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G12840 | PredictedPhenotypic Suppression | FSW = 0.0223
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G49920 | PredictedPhenotypic Suppression | FSW = 0.1254
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.2130
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G35160 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationSynthetic Lethality | FSW = 0.0896
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK) |
AT1G64880 | PredictedPhenotypic Enhancement | FSW = 0.0696
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.1289
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | PredictedPhenotypic Suppression | FSW = 0.1272
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT1G20330 | PredictedPhenotypic Suppression | FSW = 0.0118
| Unknown | SMT2 (STEROL METHYLTRANSFERASE 2) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.0293
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT2G47990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationCo-purification | FSW = 0.0493
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1759
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G16420 | PredictedPhenotypic Suppression | FSW = 0.0740
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G49060 | PredictedPhenotypic Suppression | FSW = 0.0424
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G44320 | PredictedPhenotypic Enhancement | FSW = 0.0052
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.1765
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G12730 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT1G16360 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G19750 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1374
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1938
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G55300 | PredictedPhenotypic Suppression | FSW = 0.2436
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G66590 | PredictedPhenotypic Enhancement | FSW = 0.1094
| Unknown | COX19 FAMILY PROTEIN |
AT1G78970 | PredictedPhenotypic Suppression | FSW = 0.0202
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G32160 | PredictedPhenotypic Enhancement | FSW = 0.0331
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G44065 | PredictedPhenotypic Suppression | FSW = 0.0192
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
AT3G24010 | PredictedPhenotypic Enhancement | FSW = 0.1067
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G45240 | PredictedPhenotypic Enhancement | FSW = 0.0906
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G53030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1152
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT3G53880 | PredictedAffinity Capture-MSCo-purification | FSW = 0.0426
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G28470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0536
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
AT5G01430 | PredictedPhenotypic Suppression | FSW = 0.0931
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G06600 | PredictedPhenotypic Suppression | FSW = 0.0502
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.1793
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G20340 | PredictedPhenotypic Suppression | FSW = 0.1134
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G39500 | PredictedPhenotypic Enhancement | FSW = 0.0332
| Unknown | PATTERN FORMATION PROTEIN PUTATIVE |
AT5G42720 | PredictedPhenotypic Suppression | FSW = 0.0755
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G44180 | PredictedPhenotypic Enhancement | FSW = 0.0859
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G47830 | PredictedPhenotypic Enhancement | FSW = 0.1410
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G60680 | PredictedPhenotypic Enhancement | FSW = 0.0913
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0680
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G15910 | PredictedAffinity Capture-MSPhenotypic Suppression | FSW = 0.0882
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G37420 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.2230
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G47570 | PredictedPhenotypic Suppression | FSW = 0.0219
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G12200 | PredictedPhenotypic Suppression | FSW = 0.1034
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18850 | PredictedPhenotypic Suppression | FSW = 0.0654
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G27440 | PredictedPhenotypic Suppression | FSW = 0.1101
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04700 | Predictedtwo hybrid | FSW = 0.0433
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G23895 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT5G17860 | PredictedPhenotypic Enhancement | FSW = 0.0906
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0652
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.0977
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G68570 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3483
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G32450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | NRT15 (NITRATE TRANSPORTER 15) NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT2G02020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3413
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G40460 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3346
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G22540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3413
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G13400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2903
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G01350 | PredictedGene fusion methodCo-expression | FSW = 0.0142
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G37900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G01180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3346
| Unknown | PTR5 (PEPTIDE TRANSPORTER 5) DIPEPTIDE TRANSPORTER/ TRANSPORTER |
AT5G19640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G62200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3282
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G46050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | PTR3 (PEPTIDE TRANSPORTER 3) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT2G26690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | NITRATE TRANSPORTER (NTP2) |
AT5G46040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3483
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G18880 | PredictedPhylogenetic profile method | FSW = 0.3483
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454