Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27080 - ( NRT16 (NITRATE TRANSPORTER 16) low affinity nitrate transmembrane transporter/ transporter )
32 Proteins interacs with AT1G27080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.1134
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT2G17360 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.1855
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G74560 | PredictedPhenotypic Enhancement | FSW = 0.1045
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT5G19830 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0748
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.2245
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.3024
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT4G08800 | Predictedinterologs mapping | FSW = 0.0400
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G48760 | Predictedtwo hybrid | FSW = 0.0994
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.1774
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.2075
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G19980 | Predictedtwo hybrid | FSW = 0.0371
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G07820 | PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.1347
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G26690 | PredictedPhenotypic Enhancement | FSW = 0.0538
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.0894
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1290
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0495
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1196
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.0934
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G45240 | PredictedPhenotypic Enhancement | FSW = 0.0771
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.0886
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT3G53880 | PredictedAffinity Capture-MSCo-purification | FSW = 0.1164
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.0867
| Unknown | UNKNOWN PROTEIN |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0643
| Unknown | COX19 FAMILY PROTEIN |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0538
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G25260 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.2000
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G41700 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G69860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1250
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G28470 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0618
| Unknown | TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454