Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27080 - ( NRT16 (NITRATE TRANSPORTER 16) low affinity nitrate transmembrane transporter/ transporter )

32 Proteins interacs with AT1G27080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Predicted

Affinity Capture-MS

FSW = 0.1134

Unknown

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT2G17360

Predicted

two hybrid

FSW = 0.0283

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G14010

Predicted

Affinity Capture-MS

FSW = 0.1855

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G74560

Predicted

Phenotypic Enhancement

FSW = 0.1045

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT5G19830

Predicted

two hybrid

FSW = 0.0114

Unknown

AMINOACYL-TRNA HYDROLASE
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0748

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT4G08690

Predicted

Affinity Capture-MS

FSW = 0.2245

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G45380

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

two hybrid

FSW = 0.3024

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT4G08800Predicted

interologs mapping

FSW = 0.0400

Unknown

PROTEIN KINASE PUTATIVE
AT3G48760

Predicted

two hybrid

FSW = 0.0994

Unknown

ZINC FINGER (DHHC TYPE) FAMILY PROTEIN
AT4G14340

Predicted

Affinity Capture-MS

FSW = 0.1774

Unknown

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G08980

Predicted

Affinity Capture-MS

FSW = 0.2075

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT2G19980

Predicted

two hybrid

FSW = 0.0371

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G07820

Predicted

Affinity Capture-MS

FSW = 0.0558

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G38960

Predicted

Affinity Capture-MS

FSW = 0.1347

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT1G26690

Predicted

Phenotypic Enhancement

FSW = 0.0538

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G20693

Predicted

synthetic growth defect

FSW = 0.0894

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.1290

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G78770

Predicted

synthetic growth defect

FSW = 0.0495

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT3G05760

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1196

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G24010

Predicted

Synthetic Lethality

FSW = 0.0934

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G45240

Predicted

Phenotypic Enhancement

FSW = 0.0771

Unknown

GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.0886

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT3G53880

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.1164

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G16170

Predicted

synthetic growth defect

FSW = 0.0867

Unknown

UNKNOWN PROTEIN
AT1G66590

Predicted

two hybrid

FSW = 0.0643

Unknown

COX19 FAMILY PROTEIN
AT3G11230

Predicted

Phenotypic Enhancement

FSW = 0.0538

Unknown

YIPPEE FAMILY PROTEIN
AT3G25260

Predicted

two hybrid

FSW = 0.0290

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G16960

Predicted

Affinity Capture-MS

FSW = 0.2000

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G41700

Predicted

two hybrid

FSW = 0.0124

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G69860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1250

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G28470

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0618

Unknown

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454