Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27720 - ( TAF4B (TBP-ASSOCIATED FACTOR 4B) transcription initiation factor )

16 Proteins interacs with AT1G27720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G31812

Experimental

FSW = 0.0842

Unknown

ACBP6 (ACYL-COA-BINDING PROTEIN 6) ACYL-COA BINDING / PHOSPHATIDYLCHOLINE BINDING
AT5G58470

Experimental

two hybrid

FSW = 0.2722

Unknown

TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT4G27780

Experimental

FSW = 0.1203

Unknown

ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2) ACYL-COA BINDING / LEAD ION BINDING
AT4G23650

Experimental

protein array

FSW = 0.0581

Unknown

CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G74740

Experimental

protein array

FSW = 0.0545

Unknown

CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT3G19100

Experimental

protein array

FSW = 0.0702

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT1G17440

Experimental

two hybrid

FSW = 0.6914

Unknown

EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT4G31720

Experimental

two hybrid

FSW = 0.1024

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT5G25150

Experimental

two hybrid

FSW = 0.1665

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT5G43130

Experimental

two hybrid

FSW = 0.5487

Unknown

TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR
AT1G12680

Experimental

protein array

FSW = 0.0766

Unknown

PEPKR2 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G34340

Experimental

two hybrid

FSW = 0.5192

Unknown

TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING
AT2G18000

Experimental

two hybrid

FSW = 0.1833

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G50300

Experimental

two hybrid

FSW = 0.3048

Unknown

TAF15 (TBP-ASSOCIATED FACTOR 15) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT3G10070

Experimental

two hybrid

FSW = 0.1285

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G32750

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1652

Unknown

HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454