Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27770 - ( ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) calcium channel/ calcium-transporting ATPase/ calmodulin binding )

22 Proteins interacs with AT1G27770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G41560

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6706

Class C:

plastid

ACA4 (AUTO-INHIBITED CA(2+)-ATPASE ISOFORM 4) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT1G07810

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.2250

Class C:

plasma membrane

endoplasmic reticulum

ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE
AT4G37640

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.5690

Class C:

plasma membrane

endoplasmic reticulum

ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT3G57330

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6955

Class C:

plasma membrane

ACA11 (AUTOINHIBITED CA2+-ATPASE 11) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT5G57110

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.5270

Class C:

plasma membrane

ACA8 (AUTOINHIBITED CA2+ -ATPASE ISOFORM 8) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / PROTEIN SELF-ASSOCIATION
AT4G29900

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6054

Class C:

plasma membrane

ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT3G21180

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.5510

Class C:

plasma membrane

ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT1G10130

Predicted

Synthetic Lethality

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1613

Class C:

endoplasmic reticulum

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT4G00900

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3894

Class C:

endoplasmic reticulum

ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE
AT1G22740

Predicted

interologs mapping

FSW = 0.0551

Unknown

RABG3B GTP BINDING
AT2G25340

Predicted

Affinity Capture-Western

FSW = 0.0320

Unknown

ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT3G63380

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7222

Unknown

CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE-TYPE PUTATIVE / CA(2+)-ATPASE PUTATIVE (ACA12)
AT2G22950

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7222

Unknown

CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE-TYPE PUTATIVE / CA2+-ATPASE PUTATIVE (ACA7)
AT3G22910

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.5772

Unknown

CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE-TYPE PUTATIVE / CA(2+)-ATPASE PUTATIVE (ACA13)
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT1G26530

Predicted

Affinity Capture-MS

FSW = 0.0914

Unknown

UNKNOWN PROTEIN
AT2G28390

Predicted

interologs mapping

FSW = 0.1020

Unknown

SAND FAMILY PROTEIN
AT1G55720

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0345

Unknown

ATCAX6 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT3G18430

Predicted

Phenotypic Enhancement

FSW = 0.0277

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G53710

Predicted

Synthetic Lethality

FSW = 0.0765

Unknown

HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G06710

Predicted

Gene fusion method

FSW = 0.0645

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G49770

Predicted

Gene fusion method

FSW = 0.1731

Unknown

LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454