Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27980 - ( DPL1 carboxy-lyase/ catalytic/ pyridoxal phosphate binding )

16 Proteins interacs with AT1G27980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G23670

Predicted

Phenotypic Suppression

FSW = 0.1377

Class C:

endoplasmic reticulum

LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT3G01380

Predicted

Synthetic Rescue

FSW = 0.1015

Class C:

endoplasmic reticulum

CATALYTIC/ TRANSFERASE
AT2G33120

Predicted

interologs mapping

FSW = 0.0391

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT2G44610

Predicted

interaction prediction

FSW = 0.0293

Unknown

RAB6A GTP BINDING / PROTEIN BINDING
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0087

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G04750

Predicted

interologs mapping

FSW = 0.0153

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G55130

Predicted

interaction prediction

FSW = 0.1219

Unknown

ENDOMEMBRANE PROTEIN 70 PUTATIVE
AT3G48780

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0743

Unknown

SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT1G69640

Predicted

interologs mapping

FSW = 0.2626

Unknown

SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT3G58490

Predicted

Synthetic Lethality

Phenotypic Enhancement

Phenotypic Enhancement

interologs mapping

interologs mapping

Phenotypic Enhancement

FSW = 0.3894

Unknown

PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN
AT4G16700

Predicted

Synthetic Lethality

FSW = 0.1270

Unknown

PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0417

Unknown

ORMDL FAMILY PROTEIN
AT4G00660

Predicted

Synthetic Rescue

FSW = 0.0162

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT4G21540

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.3141

Unknown

SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE
AT1G14290

Predicted

interologs mapping

FSW = 0.1957

Unknown

SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT3G06460

Predicted

interaction prediction

FSW = 0.0745

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454