Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G28060 - ( small nuclear ribonucleoprotein family protein / snRNP family protein )
57 Proteins interacs with AT1G28060| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G07590
   | PredictedAffinity Capture-MSCo-expression | FSW = 0.3008
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT4G02840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3841
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4137
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.2626
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT1G49340
| PredictedAffinity Capture-MS | FSW = 0.0257
| Class C:nucleus | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
| AT5G08290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5533
| Class C:nucleus | YLS8 CATALYTIC |
| AT1G16610
| PredictedAffinity Capture-MS | FSW = 0.0848
| Class C:nucleus | SR45 RNA BINDING / PROTEIN BINDING |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3099
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT2G23930
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4072
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT5G27720
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2544
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT3G11500
| Predictedinteraction predictionCo-expression | FSW = 0.3425
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4757
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G41500
| Predictedinteraction predictiontwo hybridtwo hybridReconstituted Complexinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingCo-expression | FSW = 0.4363
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT1G04510
| PredictedCo-purificationCo-expression | FSW = 0.2660
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G26940
| Predictedtwo hybrid | FSW = 0.0311
| Class C:nucleus | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT1G10320
| Predictedtwo hybrid | FSW = 0.0588
| Class C:nucleus | U2 SNRNP AUXILIARY FACTOR-RELATED |
| AT2G43810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1503
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G03330
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3265
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT1G76860
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3158
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30330
| PredictedAffinity Capture-MS | FSW = 0.3899
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT1G21190
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2471
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G19120
| PredictedAffinity Capture-MS | FSW = 0.1358
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3832
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G03870
| PredictedAffinity Capture-MS | FSW = 0.1820
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT5G48870
| PredictedAffinity Capture-MS | FSW = 0.2508
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT3G01390
| PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
| AT4G04910
| Predictedtwo hybridtwo hybrid | FSW = 0.0078
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G80070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3730
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT2G33340
| PredictedCo-purification | FSW = 0.2578
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G25280
| Predictedtwo hybrid | FSW = 0.0222
| Unknown | ATTLP10 (TUBBY LIKE PROTEIN 10) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
| AT2G35690
| Predictedtwo hybridtwo hybrid | FSW = 0.0031
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT1G55860
| Predictedtwo hybrid | FSW = 0.0081
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
| AT1G79650
| Predictedtwo hybrid | FSW = 0.0613
| Unknown | RAD23 DAMAGED DNA BINDING |
| AT1G16190
| Predictedtwo hybrid | FSW = 0.0080
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT1G50920
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0030
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT5G38470
| Predictedtwo hybrid | FSW = 0.0062
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT2G24830
| Predictedtwo hybridtwo hybrid | FSW = 0.0157
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN / D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT3G27530
| Predictedtwo hybridtwo hybrid | FSW = 0.0206
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
| AT5G40870
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0369
| Unknown | ATUK/UPRT1 (URIDINE KINASE/URACIL PHOSPHORIBOSYLTRANSFERASE 1) ATP BINDING / KINASE/ URACIL PHOSPHORIBOSYLTRANSFERASE/ URIDINE KINASE |
| AT5G48655
| Predictedtwo hybrid | FSW = 0.0157
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G61970
| Predictedtwo hybridtwo hybrid | FSW = 0.0469
| Unknown | SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED |
| AT1G60900
| Predictedtwo hybridtwo hybrid | FSW = 0.0369
| Unknown | U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT PUTATIVE |
| AT4G09980
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0737
| Unknown | EMB1691 (EMBRYO DEFECTIVE 1691) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE/ METHYLTRANSFERASE/ NUCLEIC ACID BINDING |
| AT4G26750
| Predictedtwo hybridtwo hybrid | FSW = 0.0099
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT4G24270
| Predictedin vivoin vitrofluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0577
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G78010
| Predictedtwo hybrid | FSW = 0.0172
| Unknown | TRNA MODIFICATION GTPASE PUTATIVE |
| AT1G14640
| PredictedAffinity Capture-MS | FSW = 0.3489
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G60170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5683
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT3G05760
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2350
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G03430
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3520
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT5G06160
| PredictedAffinity Capture-MS | FSW = 0.3353
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G55220
| PredictedAffinity Capture-MS | FSW = 0.3649
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G21660
| PredictedAffinity Capture-MS | FSW = 0.3227
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT3G07200
| Predictedtwo hybridCo-expression | FSW = 0.0178
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT4G36690
| Predictedtwo hybrid | FSW = 0.0356
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G17070
| Predictedtwo hybrid | FSW = 0.2055
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT2G47900
| Predictedtwo hybridCo-expression | FSW = 0.0444
| Unknown | ATTLP3 (TUBBY LIKE PROTEIN 3) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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