Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G28490 - ( SYP61 (SYNTAXIN OF PLANTS 61) SNAP receptor )

38 Proteins interacs with AT1G28490
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G26980

Experimental

Affinity Capture-Western

Reconstituted Complex

coimmunoprecipitation

FSW = 0.1702

Class A:

golgi

endoplasmic reticulum

SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR
AT5G16830

Experimental

split-reporter assay

FSW = 0.2179

Class A:

endoplasmic reticulum

Class B:

vacuole

golgi

Class D:

golgi (p = 0.04)

SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR
AT1G16240

Experimental

split-reporter assay

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0552

Class B:

vacuole

nucleus

golgi

endoplasmic reticulum

Class D:

golgi (p = 0.04)

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT1G79590

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.1512

Class B:

vacuole

golgi

endoplasmic reticulum

Class D:

golgi (p = 0.04)

SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT1G26670

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.3529

Class B:

plasma membrane

golgi

endoplasmic reticulum

Class D:

golgi (p = 0.04)

VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN
AT4G02195

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.2286

Unknown

SYP42 (SYNTAXIN OF PLANTS 42) SNAP RECEPTOR
AT5G39510

Predicted

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Co-purification

FSW = 0.3698

Class C:

golgi

endoplasmic reticulum

SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR
AT1G04260

Predicted

two hybrid

two hybrid

FSW = 0.0842

Class C:

golgi

MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT3G24350

Predicted

Reconstituted Complex

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.1613

Class C:

golgi

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT1G71270

Predicted

Affinity Capture-Western

FSW = 0.0485

Class C:

golgi

POK (POKY POLLEN TUBE)
AT5G46860

Predicted

Reconstituted Complex

Affinity Capture-Western

Co-purification

Synthetic Lethality

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2739

Class C:

endoplasmic reticulum

VAM3 SNAP RECEPTOR
AT3G05710

Predicted

two hybrid

Phenotypic Enhancement

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2567

Class C:

endoplasmic reticulum

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G67730

Predicted

two hybrid

FSW = 0.0261

Class C:

endoplasmic reticulum

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT2G33120

Predicted

Affinity Capture-Western

synthetic growth defect

interaction prediction

Enriched domain pair

FSW = 0.0972

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT4G30920

Predicted

in vivo

FSW = 0.0536

Unknown

CYTOSOL AMINOPEPTIDASE FAMILY PROTEIN
AT3G56190

Predicted

Affinity Capture-Western

Affinity Capture-Western

interaction prediction

FSW = 0.1930

Unknown

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT3G29100

Predicted

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.3068

Unknown

VTI13 SNARE BINDING / RECEPTOR
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0057

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G55190

Predicted

interaction prediction

interologs mapping

FSW = 0.0970

Unknown

PRA7
AT5G58060

Predicted

interaction prediction

FSW = 0.3030

Unknown

YKT61
AT3G19980

Predicted

biochemical

FSW = 0.0200

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G61210

Predicted

in vivo

in vitro

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.0842

Unknown

SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING
AT4G24770

Predicted

two hybrid

two hybrid

FSW = 0.0245

Unknown

RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING
AT4G19490

Predicted

Affinity Capture-Western

Reconstituted Complex

interaction prediction

FSW = 0.2270

Unknown

PROTEIN BINDING
AT2G42590

Predicted

two hybrid

FSW = 0.0049

Unknown

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G04750

Predicted

Affinity Capture-Western

synthetic growth defect

Enriched domain pair

Co-expression

FSW = 0.0398

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G15780

Predicted

in vitro

in vivo

in vivo

in vitro

Affinity Capture-MS

FSW = 0.1522

Unknown

ATVAMP724
AT1G50500

Predicted

Affinity Capture-Western

FSW = 0.1524

Unknown

HIT1 (HEAT-INTOLERANT 1) TRANSPORTER
AT1G10060

Predicted

two hybrid

FSW = 0.0057

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0756

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G77140

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2215

Unknown

VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT3G13235

Predicted

Affinity Capture-Western

FSW = 0.1196

Unknown

UBIQUITIN FAMILY PROTEIN
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0378

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT3G45630

Predicted

two hybrid

FSW = 0.0126

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G32270

Predicted

Affinity Capture-Western

Co-purification

Reconstituted Complex

Synthetic Lethality

FSW = 0.1702

Unknown

ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT1G50370

Predicted

biochemical

FSW = 0.0478

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G24470

Predicted

two hybrid

FSW = 0.0276

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G36300

Predicted

two hybrid

two hybrid

interaction prediction

FSW = 0.1144

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454