Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29260 - ( PEX7 peroxisome matrix targeting signal-2 binding / protein binding )

25 Proteins interacs with AT1G29260
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G68010

Experimental

interaction detection method

FSW = 0.1589

Class A:

peroxisome

Class B:

plasma membrane

Class D:

mitochondrion (p = 0.82)

HPR GLYCERATE DEHYDROGENASE/ POLY(U) BINDING
AT3G07560

Experimental

two hybrid

FSW = 0.1344

Class A:

peroxisome

Class B:

cytosol

Class D:

extracellular (p = 0.86)

PEX13 (PEROXIN 13) PROTEIN BINDING
AT5G56290

Experimental

coimmunoprecipitation

FSW = 0.0726

Class A:

peroxisome

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING
AT3G04460

Experimental

interaction detection method

FSW = 0.0827

Class A:

peroxisome

Class D:

mitochondrion (p = 0.82)

PEX12 PROTEIN BINDING / ZINC ION BINDING
AT4G22200

Experimental

interaction detection method

FSW = 0.0653

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL/ PROTEIN BINDING
AT5G62810

Predicted

Affinity Capture-MS

in vivo

two hybrid

FSW = 0.1254

Class C:

peroxisome

PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G01490

Predicted

Affinity Capture-MS

two hybrid

Co-expression

FSW = 0.0816

Class C:

peroxisome

PHYTANOYL-COA DIOXYGENASE (PHYH) FAMILY PROTEIN
AT5G43900

Predicted

interaction prediction

FSW = 0.0234

Class C:

peroxisome

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT1G04710

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

interaction prediction

FSW = 0.1641

Class C:

peroxisome

PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT3G52300

Predicted

two hybrid

FSW = 0.0334

Unknown

ATPQ (ATP SYNTHASE D CHAIN MITOCHONDRIAL) HYDROGEN ION TRANSMEMBRANE TRANSPORTER
AT3G23990

Predicted

two hybrid

FSW = 0.0309

Unknown

HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT3G13860

Predicted

two hybrid

FSW = 0.0400

Unknown

HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING
AT1G17745

Predicted

interaction prediction

two hybrid

FSW = 0.0234

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0128

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G24510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0872

Unknown

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT1G71820

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0143

Unknown

SEC6
AT5G20890

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1000

Unknown

CHAPERONIN PUTATIVE
AT3G60510

Predicted

Gene fusion method

FSW = 0.0889

Unknown

ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN
AT3G02530

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0717

Unknown

CHAPERONIN PUTATIVE
AT5G35430

Predicted

two hybrid

two hybrid

FSW = 0.0336

Unknown

BINDING
AT1G04160

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

XIB (MYOSIN XI B) MOTOR
AT1G29150

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0127

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT3G45590

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0414

Unknown

ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT5G26360

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0686

Unknown

CHAPERONIN PUTATIVE
AT3G49660

Predicted

Gene fusion method

Co-expression

FSW = 0.0430

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454