Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29260 - ( PEX7 peroxisome matrix targeting signal-2 binding / protein binding )
25 Proteins interacs with AT1G29260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G68010 | Experimentalinteraction detection method | FSW = 0.1589
| Class A:peroxisomeClass B:plasma membraneClass D:mitochondrion (p = 0.82) | HPR GLYCERATE DEHYDROGENASE/ POLY(U) BINDING |
AT3G07560 | Experimentaltwo hybrid | FSW = 0.1344
| Class A:peroxisomeClass B:cytosolClass D:extracellular (p = 0.86) | PEX13 (PEROXIN 13) PROTEIN BINDING |
AT5G56290 | Experimentalcoimmunoprecipitation | FSW = 0.0726
| Class A:peroxisomeClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT3G04460 | Experimentalinteraction detection method | FSW = 0.0827
| Class A:peroxisomeClass D:mitochondrion (p = 0.82) | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT4G22200 | Experimentalinteraction detection method | FSW = 0.0653
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL/ PROTEIN BINDING |
AT5G62810 | PredictedAffinity Capture-MSin vivotwo hybrid | FSW = 0.1254
| Class C:peroxisome | PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G01490 | PredictedAffinity Capture-MStwo hybridCo-expression | FSW = 0.0816
| Class C:peroxisome | PHYTANOYL-COA DIOXYGENASE (PHYH) FAMILY PROTEIN |
AT5G43900 | Predictedinteraction prediction | FSW = 0.0234
| Class C:peroxisome | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT1G04710 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.1641
| Class C:peroxisome | PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT3G52300 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | ATPQ (ATP SYNTHASE D CHAIN MITOCHONDRIAL) HYDROGEN ION TRANSMEMBRANE TRANSPORTER |
AT3G23990 | Predictedtwo hybrid | FSW = 0.0309
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT3G13860 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING |
AT1G17745 | Predictedinteraction predictiontwo hybrid | FSW = 0.0234
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0128
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G24510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0872
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT1G71820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0143
| Unknown | SEC6 |
AT5G20890 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1000
| Unknown | CHAPERONIN PUTATIVE |
AT3G60510 | PredictedGene fusion method | FSW = 0.0889
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G02530 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0717
| Unknown | CHAPERONIN PUTATIVE |
AT5G35430 | Predictedtwo hybridtwo hybrid | FSW = 0.0336
| Unknown | BINDING |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G29150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0127
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT3G45590 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0414
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT5G26360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0686
| Unknown | CHAPERONIN PUTATIVE |
AT3G49660 | PredictedGene fusion methodCo-expression | FSW = 0.0430
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454