Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29330 - ( ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL sequence binding / receptor )

73 Proteins interacs with AT1G29330
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G24350

Predicted

interologs mapping

FSW = 0.0041

Class C:

golgi

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT2G01470

Predicted

interologs mapping

FSW = 0.0489

Class C:

endoplasmic reticulum

STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING
AT2G17520

Predicted

Synthetic Lethality

FSW = 0.0252

Class C:

endoplasmic reticulum

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G13980

Predicted

interologs mapping

FSW = 0.0105

Class C:

endoplasmic reticulum

GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT1G21720

Predicted

interologs mapping

FSW = 0.0186

Unknown

PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G09590

Predicted

Synthetic Lethality

Synthetic Lethality

interologs mapping

interologs mapping

FSW = 0.1352

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT2G43160

Predicted

two hybrid

two hybrid

FSW = 0.0151

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT3G62290

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0182

Unknown

ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT4G09720

Predicted

Synthetic Lethality

FSW = 0.0288

Unknown

RAS-RELATED GTP-BINDING PROTEIN PUTATIVE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0425

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G57870

Predicted

Synthetic Lethality

FSW = 0.0545

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT5G01410

Predicted

Synthetic Lethality

FSW = 0.1461

Unknown

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT4G35090

Predicted

Phenotypic Enhancement

FSW = 0.1324

Unknown

CAT2 (CATALASE 2) CATALASE
AT5G16150

Predicted

Affinity Capture-Western

FSW = 0.0360

Unknown

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G07420

Predicted

two hybrid

interaction prediction

Co-expression

FSW = 0.0201

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G33340

Predicted

Synthetic Lethality

FSW = 0.0189

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10070

Predicted

Phenotypic Enhancement

FSW = 0.0173

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G03650

Predicted

Synthetic Lethality

FSW = 0.0333

Unknown

SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT4G32360

Predicted

Affinity Capture-Western

FSW = 0.0603

Unknown

NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE
AT1G76850

Predicted

two hybrid

FSW = 0.0246

Unknown

SEC5A (EXOCYST COMPLEX COMPONENT SEC5)
AT3G19930

Predicted

Phenotypic Enhancement

FSW = 0.1295

Unknown

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.0576

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT2G39480

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1941

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G34450

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2908

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G07260

Predicted

Synthetic Lethality

FSW = 0.1425

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.0873

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT1G53530

Predicted

Synthetic Lethality

FSW = 0.0450

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT2G17270

Predicted

two hybrid

Synthetic Lethality

FSW = 0.0952

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G33730

Predicted

Phenotypic Suppression

FSW = 0.0882

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G73190

Predicted

Synthetic Lethality

FSW = 0.0666

Unknown

TIP31 WATER CHANNEL
AT5G28060

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1175

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G39100

Predicted

Synthetic Lethality

FSW = 0.1212

Unknown

SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT1G21170Predicted

two hybrid

FSW = 0.0142

Unknown

SEC5B
AT3G53710

Predicted

in vitro

in vivo

in vivo

in vitro

Affinity Capture-MS

FSW = 0.0487

Unknown

AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT4G31480

Predicted

in vivo

in vitro

Affinity Capture-MS

FSW = 0.0265

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT1G02970

Predicted

Phenotypic Suppression

FSW = 0.0096

Unknown

WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE
AT1G08780

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0034

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.1467

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G20575

Predicted

interologs mapping

FSW = 0.0222

Unknown

DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT1G20696

Predicted

Synthetic Lethality

FSW = 0.0075

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G08750

Predicted

two hybrid

interaction prediction

FSW = 0.0077

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT1G34340

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1531

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G55810

Predicted

two hybrid

biochemical

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0959

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT2G24960

Predicted

Synthetic Lethality

Affinity Capture-Western

interologs mapping

Synthetic Lethality

two hybrid

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.0593

Unknown

UNKNOWN PROTEIN
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.1047

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G22480

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0055

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G53650

Predicted

Phenotypic Enhancement

FSW = 0.1466

Unknown

HISTONE H2B PUTATIVE
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0058

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT4G24040

Predicted

Phenotypic Enhancement

FSW = 0.1778

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT5G52200

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.2566

Unknown

UNKNOWN PROTEIN
AT5G53120

Predicted

Phenotypic Enhancement

FSW = 0.2660

Unknown

SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT5G65690

Predicted

Phenotypic Enhancement

FSW = 0.2284

Unknown

PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING
AT1G49520

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3091

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G60680

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0184

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G60710

Predicted

Synthetic Lethality

FSW = 0.1058

Unknown

ATB2 OXIDOREDUCTASE
AT2G21890

Predicted

Phenotypic Enhancement

FSW = 0.1027

Unknown

CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT2G23070

Predicted

Phenotypic Enhancement

FSW = 0.0822

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G41880

Predicted

interologs mapping

FSW = 0.0289

Unknown

GK-1 (GUANYLATE KINASE 1) GUANYLATE KINASE
AT2G47830

Predicted

Synthetic Lethality

FSW = 0.1115

Unknown

CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1)
AT3G29060

Predicted

Phenotypic Enhancement

FSW = 0.1424

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.2833

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G04420

Predicted

Colocalization

FSW = 0.0563

Unknown

KELCH REPEAT-CONTAINING PROTEIN
AT5G11570

Predicted

Phenotypic Enhancement

FSW = 0.0692

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G19610

Predicted

Phenotypic Enhancement

FSW = 0.0111

Unknown

SEC7 DOMAIN-CONTAINING PROTEIN
AT5G50550

Predicted

interologs mapping

FSW = 0.0482

Unknown

WD-40 REPEAT FAMILY PROTEIN / ST12P PROTEIN PUTATIVE
AT2G22425

Predicted

two hybrid

FSW = 0.0109

Unknown

PEPTIDASE
AT4G40042

Predicted

interaction prediction

FSW = 0.0234

Unknown

PEPTIDASE
AT3G25040

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2070

Unknown

ER LUMEN PROTEIN RETAINING RECEPTOR PUTATIVE / HDEL RECEPTOR PUTATIVE
AT3G25160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1728

Unknown

ER LUMEN PROTEIN RETAINING RECEPTOR FAMILY PROTEIN
AT1G19970

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1151

Unknown

ER LUMEN PROTEIN RETAINING RECEPTOR FAMILY PROTEIN
AT4G38790

Predicted

Phylogenetic profile method

FSW = 0.1728

Unknown

ER LUMEN PROTEIN RETAINING RECEPTOR FAMILY PROTEIN
AT1G75760

Predicted

Phylogenetic profile method

FSW = 0.1728

Unknown

ER LUMEN PROTEIN RETAINING RECEPTOR FAMILY PROTEIN
AT2G21190

Predicted

Phylogenetic profile method

FSW = 0.1728

Unknown

ER LUMEN PROTEIN RETAINING RECEPTOR FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454