Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29800 - ( phosphoinositide binding / zinc ion binding )

17 Proteins interacs with AT1G29800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G79550

Predicted

Phenotypic Enhancement

FSW = 0.6857

Unknown

PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE
AT3G62870

Predicted

two hybrid

synthetic growth defect

FSW = 0.0223

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G19860

Predicted

Phenotypic Enhancement

FSW = 0.0959

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G45770

Predicted

two hybrid

FSW = 0.0570

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT3G20550

Predicted

co-fractionation

Co-fractionation

FSW = 0.1642

Unknown

DDL (DAWDLE)
AT3G48870

Predicted

Synthetic Rescue

Phenotypic Suppression

Synthetic Rescue

FSW = 0.1039

Unknown

HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G42590

Predicted

two hybrid

FSW = 0.0359

Unknown

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G02500

Predicted

interologs mapping

FSW = 0.1277

Unknown

SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT3G05560

Predicted

Phenotypic Enhancement

FSW = 0.3149

Unknown

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT5G58800

Predicted

Phenotypic Enhancement

FSW = 0.2857

Unknown

QUINONE REDUCTASE FAMILY PROTEIN
AT4G19690

Predicted

co-fractionation

Co-fractionation

FSW = 0.2551

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT3G07560

Predicted

Synthetic Rescue

Phenotypic Suppression

Synthetic Rescue

FSW = 0.1265

Unknown

PEX13 (PEROXIN 13) PROTEIN BINDING
AT1G80080

Predicted

Gene fusion method

FSW = 0.0471

Unknown

TMM (TOO MANY MOUTHS) PROTEIN BINDING / RECEPTOR
AT2G46620

Predicted

two hybrid

FSW = 0.0832

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT3G03340

Predicted

Phenotypic Enhancement

FSW = 0.0343

Unknown

UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT5G42190

Predicted

Phenotypic Enhancement

FSW = 0.0748

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G61330

Predicted

Phenotypic Enhancement

FSW = 0.3034

Unknown

RRNA PROCESSING PROTEIN-RELATED

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454