Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29880 - ( glycyl-tRNA synthetase / glycine--tRNA ligase )

14 Proteins interacs with AT1G29880
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G47720

Predicted

Affinity Capture-MS

FSW = 0.0714

Class C:

cytosol

ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0116

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT1G05570

Predicted

interaction prediction

FSW = 0.0571

Unknown

CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G20760

Predicted

Affinity Capture-MS

FSW = 0.0274

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT5G35910

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT3G14600

Predicted

interologs mapping

Affinity Capture-MS

FSW = 0.1000

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AC)
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G20990

Predicted

in vivo

in vitro

FSW = 0.0529

Unknown

B73 MOLYBDENUM ION BINDING
AT1G54290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0378

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G13680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0181

Unknown

CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT4G03430

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0189

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT2G20290

Predicted

Affinity Capture-MS

FSW = 0.0112

Unknown

XIG MOTOR/ PROTEIN BINDING
AT5G17270

Predicted

Affinity Capture-MS

FSW = 0.0618

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G54440

Predicted

Affinity Capture-MS

FSW = 0.0269

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454