Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29900 - ( CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP binding / carbamoyl-phosphate synthase/ catalytic )
57 Proteins interacs with AT1G29900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0056
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0460
| Class C:plastid | HISTONE H4 |
AT3G63130 | PredictedAffinity Capture-MS | FSW = 0.0246
| Class C:plastid | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0788
| Class C:plastid | DNA HELICASE PUTATIVE |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0439
| Class C:plastid | HISTONE H4 |
AT5G22330 | PredictedAffinity Capture-MS | FSW = 0.0321
| Class C:plastid | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT5G03290 | PredictedAffinity Capture-MS | FSW = 0.0369
| Class C:plastid | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT3G27740 | Predictedx-ray crystallography | FSW = 0.0172
| Class C:plastid | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) CARBAMOYL-PHOSPHATE SYNTHASE (GLUTAMINE-HYDROLYZING)/ CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0266
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
AT1G67120 | PredictedAffinity Capture-MS | FSW = 0.0536
| Class C:plastid | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.1169
| Class C:plastid | DNA HELICASE-RELATED |
AT1G48090 | PredictedAffinity Capture-MS | FSW = 0.0148
| Class C:plastid | PHOSPHOINOSITIDE BINDING |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0052
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G54270 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0232
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT4G17140 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK) |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G33370 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT4G38600 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT5G47010 | PredictedSynthetic Rescue | FSW = 0.0126
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT5G04340 | PredictedPhenotypic Suppression | FSW = 0.0166
| Unknown | ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G44510 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT1G72440 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G07050 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G10370 | Predictedpull down | FSW = 0.0137
| Unknown | SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
AT3G09810 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT3G03600 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31180 | PredictedAffinity Capture-MS | FSW = 0.0567
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT5G48840 | Predictedpull down | FSW = 0.0166
| Unknown | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) PANTOATE-BETA-ALANINE LIGASE/ PROTEIN HOMODIMERIZATION |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT5G40760 | Predictedpull down | FSW = 0.0246
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT2G45790 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
AT1G27880 | Predictedtwo hybridtwo hybrid | FSW = 0.0178
| Unknown | ATP-DEPENDENT DNA HELICASE PUTATIVE |
AT3G53120 | PredictedPhenotypic Suppression | FSW = 0.0174
| Unknown | VPS37-1 |
AT5G10810 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0516
| Unknown | ATER |
AT5G47240 | Predictedtwo hybridtwo hybrid | FSW = 0.0174
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT1G09300 | Predictedpull down | FSW = 0.0178
| Unknown | METALLOPEPTIDASE M24 FAMILY PROTEIN |
AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT2G15790 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16950 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G03110 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G06910 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.1401
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G02880 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT2G39260 | PredictedSynthetic Rescue | FSW = 0.0174
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G26870 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT3G06000 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G55810 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G04480 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0324
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G49040 | PredictedGene fusion method | FSW = 0.0738
| Unknown | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) PROTEIN BINDING |
AT5G44510 | PredictedGene fusion method | FSW = 0.0656
| Unknown | TAO1 (TARGET OF AVRB OPERATION1) ATP BINDING / PROTEIN BINDING / TRANSMEMBRANE RECEPTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454