Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29960 - ( peptidase/ serine-type peptidase )
21 Proteins interacs with AT1G29960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G40210 | Experimentaltwo hybrid | FSW = 0.1333
| Class A:nucleusClass B:mitochondrionClass D:nucleus (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | AGL48 (AGAMOUS-LIKE 48) TRANSCRIPTION FACTOR |
AT5G38740 | Experimentaltwo hybrid | FSW = 0.0444
| Unknown | AGL77 (AGAMOUS-LIKE 77) TRANSCRIPTION FACTOR |
AT1G16240 | PredictedColocalization | FSW = 0.0262
| Class C:nucleus | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT1G02500 | PredictedColocalizationReconstituted Complex | FSW = 0.0805
| Class C:nucleus | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT1G65440 | PredictedAffinity Capture-MS | FSW = 0.0300
| Class C:nucleus | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT5G55630 | PredictedAffinity Capture-MS | FSW = 0.2703
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0196
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G14030 | Predictedtwo hybrid | FSW = 0.1333
| Unknown | RIBULOSE-15 BISPHOSPHATE CARBOXYLASE OXYGENASE LARGE SUBUNIT N-METHYLTRANSFERASE PUTATIVE |
AT1G01920 | Predictedtwo hybrid | FSW = 0.1333
| Unknown | SET DOMAIN-CONTAINING PROTEIN |
AT2G36380 | PredictedAffinity Capture-MS | FSW = 0.2306
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G53750 | PredictedAffinity Capture-MS | FSW = 0.0690
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.2049
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.1185
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT2G36930 | PredictedPhenotypic Enhancement | FSW = 0.0446
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G50845 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF59 (INTERPROIPR002744) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VACUOLAR SORTING SIGNAL BINDING (TAIRAT1G683102) HAS 415 BLAST HITS TO 414 PROTEINS IN 153 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 216 FUNGI - 86 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 72 (SOURCE NCBI BLINK) |
AT5G48010 | PredictedAffinity Capture-MSReconstituted ComplexColocalization | FSW = 0.1196
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT1G80460 | PredictedAffinity Capture-MS | FSW = 0.1536
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G28060 | PredictedColocalization | FSW = 0.2058
| Unknown | PROTEIN KINASE-RELATED |
AT4G20100 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT5G22030 | PredictedPhenotypic Enhancement | FSW = 0.1390
| Unknown | UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G40530 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454