Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G30220 - ( INT2 (INOSITOL TRANSPORTER 2) carbohydrate transmembrane transporter/ sugarhydrogen symporter )
32 Proteins interacs with AT1G30220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G38510 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT2G48020 | PredictedPhylogenetic profile method | FSW = 0.0480
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G01690 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0222
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G14200 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0627
| Unknown | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G23310 | PredictedPhenotypic Enhancement | FSW = 0.0721
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G14980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationsynthetic growth defect | FSW = 0.0824
| Unknown | PHD FINGER TRANSCRIPTION FACTOR PUTATIVE |
AT3G45980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0923
| Unknown | HTB9 DNA BINDING |
AT4G20400 | PredictedCo-purificationbiochemicalReconstituted ComplexAffinity Capture-Western | FSW = 0.0183
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN |
AT2G07671 | PredictedAffinity Capture-Western | FSW = 0.0306
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G52300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0289
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G19510 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.1017
| Unknown | HAT31 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.0454
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0692
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G09640 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationSynthetic LethalityReconstituted Complextwo hybrid | FSW = 0.0941
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G44590 | PredictedReconstituted Complex | FSW = 0.0323
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT4G09140 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complexinterologs mappingAffinity Capture-MSCo-purification | FSW = 0.0104
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT4G30530 | PredictedAffinity Capture-MS | FSW = 0.0994
| Unknown | DEFENSE-RELATED PROTEIN PUTATIVE |
AT4G32140 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.0901
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF6 TRANSMEMBRANE (INTERPROIPR000620) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MEMBRANE PROTEIN (TAIRAT3G070801) HAS 1078 BLAST HITS TO 1078 PROTEINS IN 273 SPECIES ARCHAE - 20 BACTERIA - 294 METAZOA - 244 FUNGI - 147 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 332 (SOURCE NCBI BLINK) |
AT5G54960 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0641
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
AT2G36300 | Predictedtwo hybrid | FSW = 0.0320
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT2G35740 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2193
| Unknown | INT3 (NOSITOL TRANSPORTER 3) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G16480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1645
| Unknown | INT4 (INOSITOL TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MYO-INOSITOLHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454