Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G30230 - ( elongation factor 1-beta / EF-1-beta )

17 Proteins interacs with AT1G30230
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07920Predicted

Affinity Capture-MS

Co-crystal Structure

interologs mapping

Enriched domain pair

FSW = 0.1976

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G60390

Predicted

Affinity Capture-MS

Co-crystal Structure

FSW = 0.0583

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G07940Predicted

Co-crystal Structure

interologs mapping

Affinity Capture-MS

interaction prediction

Enriched domain pair

FSW = 0.0791

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G09640

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0842

Class C:

plasma membrane

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G57720

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

interaction prediction

FSW = 0.1912

Class C:

plasma membrane

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT5G54840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0388

Unknown

SGP1 GTP BINDING
AT3G21700

Predicted

Affinity Capture-MS

FSW = 0.0373

Unknown

SGP2 GTP BINDING
AT1G07030

Predicted

two hybrid

FSW = 0.0902

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G30775

Predicted

two hybrid

FSW = 0.0529

Unknown

ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE
AT3G02760

Predicted

in vivo

in vitro

Affinity Capture-MS

FSW = 0.1625

Unknown

ATP BINDING / AMINOACYL-TRNA LIGASE/ HISTIDINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0101

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT3G60860

Predicted

Synthetic Lethality

FSW = 0.0220

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT3G11450

Predicted

Affinity Capture-MS

FSW = 0.0211

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT1G01960

Predicted

Synthetic Lethality

FSW = 0.0241

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G19510

Predicted

Phylogenetic profile method

FSW = 0.1170

Unknown

ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT2G18110

Predicted

Phylogenetic profile method

FSW = 0.4615

Unknown

ELONGATION FACTOR 1-BETA PUTATIVE / EF-1-BETA PUTATIVE
AT5G12110

Predicted

Phylogenetic profile method

FSW = 0.3636

Unknown

ELONGATION FACTOR 1B ALPHA-SUBUNIT 1 (EEF1BALPHA1)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454