Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G30400 - ( MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1) ATPase coupled to transmembrane movement of substances / xenobiotic-transporting ATPase )

16 Proteins interacs with AT1G30400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G54010

Experimental

FSW = 0.0381

Class B:

vacuole

nucleus

cytosol

Class D:

cytosol (p = 0.67)

PAS1 (PASTICCINO 1) FK506 BINDING / BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G65480

Experimental

FSW = 0.0443

Class D:

cytosol (p = 0.67)

FT (FLOWERING LOCUS T) PHOSPHATIDYLETHANOLAMINE BINDING / PROTEIN BINDING
AT3G21640

Experimental

affinity technology

Affinity Capture-Western

pull down

two hybrid

Reconstituted Complex

co-fractionation

Co-fractionation

in vitro

FSW = 0.0933

Class D:

cytosol (p = 0.67)

TWD1 (TWISTED DWARF 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G61790

Predicted

in vivo

FSW = 0.0474

Class C:

vacuole

CALNEXIN 1 (CNX1)
AT2G47800

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7945

Class C:

vacuole

ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / FOLIC ACID TRANSPORTER
AT3G21250

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7356

Class C:

vacuole

ATMRP6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G13080

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.3103

Class C:

vacuole

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G13090

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7094

Class C:

vacuole

ATMRP8 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G59140

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7356

Class C:

vacuole

ATMRP14 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G13100

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7639

Class C:

vacuole

ATMRP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G04120

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7945

Class C:

vacuole

ATMRP5 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / SULFONYLUREA RECEPTOR
AT3G62700

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7945

Class C:

vacuole

ATMRP10 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G34660

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1636

Class C:

vacuole

ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G30420

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.7945

Unknown

ATMRP12 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G30410

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.7945

Unknown

ATMRP13 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G60160

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.8048

Unknown

ATMRP9 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454