Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G30460 - ( CPSF30 RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding )

24 Proteins interacs with AT1G30460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G22220

Experimental

FSW = 0.0230

Unknown

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G05410

Experimental

FSW = 0.0613

Unknown

DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G71930

Experimental

FSW = 0.1471

Unknown

VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT5G23880

Experimental

two hybrid

pull down

pull down

two hybrid

Reconstituted Complex

in vitro

FSW = 0.3056

Unknown

CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING
AT5G51660

Experimental

two hybrid

two hybrid

FSW = 0.1458

Unknown

CPSF160 NUCLEIC ACID BINDING
AT5G58040

Experimental

pull down

two hybrid

FSW = 0.3063

Unknown

ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]) RNA BINDING / PROTEIN BINDING
AT3G04680

Experimental

two hybrid

two hybrid

FSW = 0.2112

Unknown

CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING
AT1G66500

Experimental

FSW = 0.2675

Unknown

ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN
AT1G17760

Experimental

Reconstituted Complex

FSW = 0.1937

Unknown

CSTF77 PROTEIN BINDING
AT4G04885

Experimental

FSW = 0.1571

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT3G06560

Experimental

FSW = 0.3573

Unknown

POLYNUCLEOTIDE ADENYLYLTRANSFERASE/ PROTEIN BINDING
AT2G25850

Experimental

pull down

FSW = 0.3030

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G60940

Experimental

FSW = 0.0849

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G66652

Experimental

FSW = 0.1109

Unknown

FIP1 MOTIF-CONTAINING PROTEIN
AT4G25550

Experimental

FSW = 0.0514

Unknown

PROTEIN BINDING
AT1G28200

Experimental

two hybrid

two hybrid

inferred by author

FSW = 0.1286

Unknown

FIP1 (FH INTERACTING PROTEIN 1)
AT1G30450

Predicted

in vitro

in vivo

Affinity Capture-MS

FSW = 0.0593

Unknown

CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1) CATIONCHLORIDE SYMPORTER/ SODIUMPOTASSIUMCHLORIDE SYMPORTER
AT5G27380

Predicted

two hybrid

FSW = 0.0324

Unknown

GSH2 (GLUTATHIONE SYNTHETASE 2) GLUTATHIONE SYNTHASE
AT5G64200

Predicted

in vitro

two hybrid

FSW = 0.0258

Unknown

ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G17690

Predicted

two hybrid

FSW = 0.0145

Unknown

TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT5G13430

Predicted

two hybrid

FSW = 0.0775

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE
AT5G03730

Predicted

biochemical

FSW = 0.0069

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G16280

Predicted

two hybrid

FSW = 0.0315

Unknown

UNKNOWN PROTEIN
AT4G02430

Predicted

in vitro

two hybrid

in vivo

FSW = 0.0296

Unknown

PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454