Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G30890 - ( integral membrane HRF1 family protein )

11 Proteins interacs with AT1G30890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G19640

Predicted

two hybrid

FSW = 0.1146

Unknown

ARA7 GTP BINDING
AT1G02130

Predicted

two hybrid

Reconstituted Complex

two hybrid

FSW = 0.1272

Unknown

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G22740

Predicted

Reconstituted Complex

two hybrid

FSW = 0.3556

Unknown

RABG3B GTP BINDING
AT3G09900

Predicted

two hybrid

Reconstituted Complex

two hybrid

FSW = 0.2165

Unknown

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G06400

Predicted

two hybrid

Reconstituted Complex

two hybrid

FSW = 0.1194

Unknown

ARA-2 GTP BINDING
AT2G22290

Predicted

Reconstituted Complex

FSW = 0.1644

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G04260

Predicted

two hybrid

two hybrid

FSW = 0.4043

Unknown

MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT1G69700

Predicted

two hybrid

FSW = 0.3478

Unknown

ATHVA22C
AT2G36300

Predicted

two hybrid

two hybrid

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Reconstituted Complex

two hybrid

FSW = 0.3450

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT2G18840

Predicted

Reconstituted Complex

two hybrid

FSW = 0.5818

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT1G16225

Predicted

two hybrid

FSW = 0.1955

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454