Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G31300 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN integral to membrane EXPRESSED IN 24 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s TRAM LAG1 and CLN8 homology (InterProIPR006634) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT4G196452) Has 478 Blast hits to 478 proteins in 104 species Archae - 0 Bacteria - 0 Metazoa - 269 Fungi - 98 Plants - 80 Viruses - 0 Other Eukaryotes - 31 (source NCBI BLink) )

10 Proteins interacs with AT1G31300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G16660

Predicted

Phenotypic Enhancement

FSW = 0.0271

Unknown

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT1G07810

Predicted

Phenotypic Enhancement

FSW = 0.0566

Unknown

ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE
AT5G54770

Predicted

Phenotypic Enhancement

FSW = 0.0559

Unknown

THI1 PROTEIN HOMODIMERIZATION
AT5G60540

Predicted

Phenotypic Suppression

FSW = 0.0262

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT1G02780

Predicted

Reconstituted Complex

FSW = 0.0180

Unknown

EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G04720

Predicted

Affinity Capture-MS

FSW = 0.0140

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G25155Predicted

Phenotypic Suppression

FSW = 0.0253

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT3G54490

Predicted

two hybrid

Affinity Capture-Western

two hybrid

FSW = 0.1353

Unknown

RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G09290

Predicted

Phenotypic Enhancement

FSW = 0.0513

Unknown

3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE
AT5G01770

Predicted

Phenotypic Enhancement

FSW = 0.0543

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454