Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G31812 - ( ACBP6 (acyl-CoA-binding protein 6) acyl-CoA binding / phosphatidylcholine binding )

7 Proteins interacs with AT1G31812
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G43810

Experimental

FSW = 0.0073

Class A:

plasma membrane

Class B:

unclear

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G27720

Experimental

FSW = 0.0842

Unknown

TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR
AT1G14850

Predicted

Affinity Capture-MS

FSW = 0.0443

Class C:

plasma membrane

NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT2G47770

Predicted

in vivo

in vitro

FSW = 0.0745

Unknown

BENZODIAZEPINE RECEPTOR-RELATED
AT1G21170Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

SEC5B
AT1G36280

Predicted

Affinity Capture-MS

FSW = 0.1067

Unknown

ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE
AT3G53570

Predicted

Affinity Capture-MS

FSW = 0.0762

Unknown

AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454