Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G31820 - ( amino acid permease family protein )

9 Proteins interacs with AT1G31820
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G57550

Predicted

two hybrid

FSW = 0.1203

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT2G18250

Predicted

two hybrid

FSW = 0.0585

Unknown

ATCOAD (4-PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE) NUCLEOTIDYLTRANSFERASE/ PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE
AT3G06460

Predicted

two hybrid

interaction prediction

FSW = 0.1071

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G24470

Predicted

two hybrid

FSW = 0.0678

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G16570

Predicted

two hybrid

interaction prediction

FSW = 0.1109

Unknown

GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN
AT2G38905

Predicted

interaction prediction

FSW = 0.2078

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT3G19553

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3607

Unknown

AMINO ACID PERMEASE FAMILY PROTEIN
AT5G05630

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3297

Unknown

AMINO ACID PERMEASE FAMILY PROTEIN
AT1G31830

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3297

Unknown

AMINO ACID PERMEASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454