Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G31970 - ( STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding )
25 Proteins interacs with AT1G31970Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G03920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0914
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT2G33340![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0354
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G35160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G52640![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0063
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G25630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1495
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G57150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1941
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT5G08180![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2315
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G48920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.1216
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G12860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1089
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G56110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1304
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT4G08350![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G20490![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.2250
| Unknown | NOP10 RNA BINDING |
AT4G22380![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1449
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G64520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G40700![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0428
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
AT3G16840![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0121
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G24080![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.1446
| Unknown | KRR1 FAMILY PROTEIN |
AT5G08420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0738
| Unknown | RNA BINDING |
AT4G12600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1500
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT3G13970![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0248
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT1G55150![]() ![]() ![]() ![]() | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0112
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT1G20300![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.1254
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G16380![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.1422
| Unknown | PAB6 (POLY(A) BINDING PROTEIN 6) RNA BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454