Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G32090 - ( early-responsive to dehydration protein-related / ERD protein-related )
43 Proteins interacs with AT1G32090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44610 | Predictedinteraction prediction | FSW = 0.0034
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G45780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0834
| Class C:plasma membrane | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0068
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G26340 | PredictedSynthetic Rescue | FSW = 0.0225
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G29360 | PredictedAffinity Capture-MS | FSW = 0.1931
| Class C:plasma membrane | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0427
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0679
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G10350 | Predictedbiochemical | FSW = 0.0602
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0541
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G48880 | PredictedAffinity Capture-MS | FSW = 0.1331
| Unknown | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.0850
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.0751
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT2G31300 | PredictedAffinity Capture-MS | FSW = 0.0232
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.0373
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT4G16420 | PredictedPhenotypic Enhancement | FSW = 0.0564
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G16570 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0142
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G66740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationReconstituted Complex | FSW = 0.0803
| Unknown | SGA2 |
AT2G04620 | Predictedtwo hybrid | FSW = 0.0445
| Unknown | CATION EFFLUX FAMILY PROTEIN |
AT2G16230 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.2554
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G34750 | PredictedAffinity Capture-Western | FSW = 0.1348
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT3G49420 | PredictedSynthetic Rescue | FSW = 0.1108
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT4G04695 | PredictedSynthetic RescueReconstituted ComplexCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationCo-purification | FSW = 0.1863
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G14320 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.0644
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G35980 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G49560 | PredictedPhenotypic Enhancement | FSW = 0.0618
| Unknown | UNKNOWN PROTEIN |
AT5G58180 | PredictedCo-purification | FSW = 0.1252
| Unknown | ATYKT62 |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.0972
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.0748
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G39500 | PredictedPhenotypic Suppression | FSW = 0.0151
| Unknown | PATTERN FORMATION PROTEIN PUTATIVE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G23290 | Predictedinteraction prediction | FSW = 0.0097
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT1G29990 | Predictedinteraction prediction | FSW = 0.0127
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT4G02900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0957
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G15430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1094
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM MEMBRANE EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF221 (INTERPROIPR003864) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED (TAIRAT3G216201) HAS 923 BLAST HITS TO 821 PROTEINS IN 135 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 164 FUNGI - 446 PLANTS - 258 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454