Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32130 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 25 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s TFIIS N-terminal (InterProIPR017923) IWS1 C-terminal (InterProIPR008654) BEST Arabidopsis thaliana protein match is IWS1 C-terminus family protein (TAIRAT4G190001) Has 907 Blast hits to 871 proteins in 182 species Archae - 4 Bacteria - 14 Metazoa - 417 Fungi - 195 Plants - 42 Viruses - 8 Other Eukaryotes - 227 (source NCBI BLink) )
48 Proteins interacs with AT1G32130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G65440 | Experimentaltwo hybrid | FSW = 0.1657
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT1G19350 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0209
| Unknown | BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0199
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G02520 | PredictedPhenotypic Suppression | FSW = 0.0714
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G59690 | PredictedPhenotypic Enhancement | FSW = 0.1610
| Unknown | HISTONE H4 |
AT4G35800 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1405
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G58230 | PredictedPhenotypic Enhancement | FSW = 0.1294
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0517
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0747
| Unknown | SEC22 TRANSPORTER |
AT1G21700 | PredictedPhenotypic Suppression | FSW = 0.0250
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G19310 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.1592
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.1167
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G13445 | PredictedSynthetic Rescue | FSW = 0.0377
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G44530 | PredictedPhenotypic Enhancement | FSW = 0.1832
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G17590 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.1270
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0568
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G63210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1802
| Unknown | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.1038
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G13370 | PredictedPhenotypic Suppression | FSW = 0.1073
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G15430 | PredictedAffinity Capture-MS | FSW = 0.1510
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G27470 | PredictedPhenotypic Enhancement | FSW = 0.1657
| Unknown | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.1496
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.2885
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G55520 | PredictedSynthetic Rescue | FSW = 0.0384
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT3G52090 | PredictedAffinity Capture-MS | FSW = 0.1541
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G15400 | PredictedAffinity Capture-MS | FSW = 0.1140
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G38470 | PredictedPhenotypic Enhancement | FSW = 0.0191
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT4G24740 | Predictedtwo hybrid | FSW = 0.0101
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT1G10930 | PredictedPhenotypic Enhancement | FSW = 0.0230
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G63670 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.3064
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G34150 | PredictedPhenotypic Suppression | FSW = 0.0476
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.0845
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1518
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G61040 | Predictedsynthetic growth defect | FSW = 0.2572
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.1358
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G20800 | PredictedPhenotypic Enhancement | FSW = 0.0729
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G46320 | PredictedPhenotypic Enhancement | FSW = 0.0858
| Unknown | HISTONE H4 |
AT4G33100 | PredictedPhenotypic Enhancement | FSW = 0.0741
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT5G10390 | PredictedPhenotypic Enhancement | FSW = 0.1968
| Unknown | HISTONE H3 |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.2273
| Unknown | HISTONE H3 |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.1499
| Unknown | ORMDL FAMILY PROTEIN |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.1021
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G46030 | PredictedPhenotypic Enhancement | FSW = 0.4328
| Unknown | UNKNOWN PROTEIN |
AT5G59140 | PredictedPhenotypic Enhancement | FSW = 0.0116
| Unknown | SKP1 FAMILY PROTEIN |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.2548
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G08565 | PredictedAffinity Capture-MS | FSW = 0.1947
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G07170 | Predictedtwo hybridinteraction prediction | FSW = 0.0185
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454