Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G32130 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 25 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s TFIIS N-terminal (InterProIPR017923) IWS1 C-terminal (InterProIPR008654) BEST Arabidopsis thaliana protein match is IWS1 C-terminus family protein (TAIRAT4G190001) Has 907 Blast hits to 871 proteins in 182 species Archae - 4 Bacteria - 14 Metazoa - 417 Fungi - 195 Plants - 42 Viruses - 8 Other Eukaryotes - 227 (source NCBI BLink) )

48 Proteins interacs with AT1G32130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G65440

Experimental

two hybrid

FSW = 0.1657

Unknown

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT1G19350

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0209

Unknown

BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0199

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G02520

Predicted

Phenotypic Suppression

FSW = 0.0714

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G59690Predicted

Phenotypic Enhancement

FSW = 0.1610

Unknown

HISTONE H4
AT4G35800

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1405

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G58230

Predicted

Phenotypic Enhancement

FSW = 0.1294

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT5G23630

Predicted

Phenotypic Enhancement

FSW = 0.0517

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.0747

Unknown

SEC22 TRANSPORTER
AT1G21700

Predicted

Phenotypic Suppression

FSW = 0.0250

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT5G19310

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.1592

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1167

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G13445

Predicted

Synthetic Rescue

FSW = 0.0377

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G44530

Predicted

Phenotypic Enhancement

FSW = 0.1832

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G17590

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.1270

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.0568

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G63210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1802

Unknown

RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.1038

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G13370

Predicted

Phenotypic Suppression

FSW = 0.1073

Unknown

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G15430

Predicted

Affinity Capture-MS

FSW = 0.1510

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G27470

Predicted

Phenotypic Enhancement

FSW = 0.1657

Unknown

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.1496

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2885

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0768

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G55520

Predicted

Synthetic Rescue

FSW = 0.0384

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G52090

Predicted

Affinity Capture-MS

FSW = 0.1541

Unknown

NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G15400

Predicted

Affinity Capture-MS

FSW = 0.1140

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G38470

Predicted

Phenotypic Enhancement

FSW = 0.0191

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT4G24740

Predicted

two hybrid

FSW = 0.0101

Unknown

AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE
AT1G10930

Predicted

Phenotypic Enhancement

FSW = 0.0230

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G63670

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3064

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G34150

Predicted

Phenotypic Suppression

FSW = 0.0476

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.0845

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1518

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G61040

Predicted

synthetic growth defect

FSW = 0.2572

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.1358

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G20800

Predicted

Phenotypic Enhancement

FSW = 0.0729

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G46320Predicted

Phenotypic Enhancement

FSW = 0.0858

Unknown

HISTONE H4
AT4G33100

Predicted

Phenotypic Enhancement

FSW = 0.0741

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT5G10390Predicted

Phenotypic Enhancement

FSW = 0.1968

Unknown

HISTONE H3
AT5G10400Predicted

Phenotypic Enhancement

FSW = 0.2273

Unknown

HISTONE H3
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.1499

Unknown

ORMDL FAMILY PROTEIN
AT5G43500

Predicted

Phenotypic Enhancement

FSW = 0.1021

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G46030

Predicted

Phenotypic Enhancement

FSW = 0.4328

Unknown

UNKNOWN PROTEIN
AT5G59140

Predicted

Phenotypic Enhancement

FSW = 0.0116

Unknown

SKP1 FAMILY PROTEIN
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.2548

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G08565

Predicted

Affinity Capture-MS

FSW = 0.1947

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G07170

Predicted

two hybrid

interaction prediction

FSW = 0.0185

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454