Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32270 - ( ATSYP24 SNAP receptor/ protein binding )
23 Proteins interacs with AT1G32270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02130 | Predictedtwo hybrid | FSW = 0.0204
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT3G56190 | Predictedtwo hybridtwo hybrid | FSW = 0.0980
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT3G28710 | Predictedtwo hybrid | FSW = 0.0076
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT2G45200 | PredictedReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.0571
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT4G04910 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0442
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G13710 | PredictedSynthetic Rescue | FSW = 0.0080
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT5G58060 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.2711
| Unknown | YKT61 |
AT3G08530 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0411
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT4G19490 | Predictedtwo hybrid | FSW = 0.1642
| Unknown | PROTEIN BINDING |
AT1G04750 | PredictedAffinity Capture-WesternSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0239
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G71820 | PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | SEC6 |
AT1G26670 | Predictedtwo hybridtwo hybridinterologs mappingAffinity Capture-Westerninterologs mappingReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.2857
| Unknown | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G06400 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | ARA-2 GTP BINDING |
AT2G30050 | PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G28490 | PredictedAffinity Capture-WesternCo-purificationReconstituted ComplexSynthetic Lethality | FSW = 0.1702
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G55130 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT1G77140 | PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.1067
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT3G54860 | PredictedAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.0392
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT5G20350 | PredictedAffinity Capture-MS | FSW = 0.0994
| Unknown | TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING |
AT1G16225 | PredictedReconstituted Complex | FSW = 0.2286
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK) |
AT3G16650 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0143
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT2G39805 | Predictedtwo hybridtwo hybrid | FSW = 0.0832
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT4G26550 | Predictedtwo hybrid | FSW = 0.0914
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454