Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32380 - ( ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) )
37 Proteins interacs with AT1G32380Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0687
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT5G41790 | Predictedpull down | FSW = 0.0075
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0092
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G05630 | Predictedpull down | FSW = 0.0382
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT5G20520 | Predictedpull down | FSW = 0.0463
| Unknown | WAV2 (WAVY GROWTH 2) |
AT2G21170 | Predictedpull down | FSW = 0.0382
| Unknown | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT5G23140 | Predictedpull down | FSW = 0.0354
| Unknown | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
AT1G74260 | Predictedpull down | FSW = 0.0267
| Unknown | PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
AT2G28880 | Predictedpull down | FSW = 0.0224
| Unknown | EMB1997 (EMBRYO DEFECTIVE 1997) ANTHRANILATE SYNTHASE/ CATALYTIC/ OXO-ACID-LYASE |
AT1G18440 | Predictedpull down | FSW = 0.0488
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT2G38040 | Predictedpull down | FSW = 0.0399
| Unknown | CAC3 ACETYL-COA CARBOXYLASE |
AT5G51820 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT4G21210 | Predictedpull down | FSW = 0.0824
| Unknown | ATRP1 (PPDK REGULATORY PROTEIN) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE |
AT1G17160 | Predictedblue native page | FSW = 0.0976
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT3G54670 | Predictedpull down | FSW = 0.0149
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT2G36880 | Predictedpull down | FSW = 0.0423
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT5G63680 | Predictedpull down | FSW = 0.0250
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G18270 | Predictedpull down | FSW = 0.0585
| Unknown | KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN |
AT2G47510 | Predictedpull down | FSW = 0.0142
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G20420 | Predictedpull down | FSW = 0.0167
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT1G67710 | Predictedpull down | FSW = 0.0539
| Unknown | ARR11 (RESPONSE REGULATOR 11) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G25600 | Predictedpull down | FSW = 0.0216
| Unknown | SPIK (SHAKER POLLEN INWARD K+ CHANNEL) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL/ POTASSIUM CHANNEL |
AT1G12244 | Predictedpull down | FSW = 0.0571
| Unknown | DNA BINDING / HYDROLASE ACTING ON ESTER BONDS / NUCLEASE/ NUCLEIC ACID BINDING / RECOMBINASE |
AT1G76050 | Predictedpull down | FSW = 0.0842
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT2G04560 | Predictedpull down | FSW = 0.0549
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G02570 | Predictedpull down | FSW = 0.0267
| Unknown | MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) MANNOSE-6-PHOSPHATE ISOMERASE |
AT3G18630 | Predictedpull down | FSW = 0.0610
| Unknown | URACIL DNA GLYCOSYLASE FAMILY PROTEIN |
AT3G23490 | Predictedpull down | FSW = 0.0220
| Unknown | CYN (CYANASE) DNA BINDING / CYANATE HYDRATASE/ HYDRO-LYASE |
AT4G00560 | Predictedpull down | FSW = 0.0504
| Unknown | METHIONINE ADENOSYLTRANSFERASE REGULATORY BETA SUBUNIT-RELATED |
AT5G10910 | Predictedpull down | FSW = 0.0229
| Unknown | MRAW METHYLASE FAMILY PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0124
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0104
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT2G47570 | PredictedPhenotypic Enhancement | FSW = 0.0209
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT4G12230 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT2G35390 | PredictedPhylogenetic profile method | FSW = 0.0138
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G44530 | PredictedPhylogenetic profile method | FSW = 0.0564
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454