Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32380 - ( ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) )

37 Proteins interacs with AT1G32380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

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FSW = 0.0687

Unknown

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT5G41790

Predicted

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FSW = 0.0075

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0092

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G05630

Predicted

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FSW = 0.0382

Unknown

PLDP2 PHOSPHOLIPASE D
AT5G20520

Predicted

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FSW = 0.0463

Unknown

WAV2 (WAVY GROWTH 2)
AT2G21170

Predicted

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FSW = 0.0382

Unknown

TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE
AT5G23140

Predicted

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FSW = 0.0354

Unknown

NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT1G74260

Predicted

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FSW = 0.0267

Unknown

PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
AT2G28880

Predicted

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FSW = 0.0224

Unknown

EMB1997 (EMBRYO DEFECTIVE 1997) ANTHRANILATE SYNTHASE/ CATALYTIC/ OXO-ACID-LYASE
AT1G18440

Predicted

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FSW = 0.0488

Unknown

PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT2G38040

Predicted

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FSW = 0.0399

Unknown

CAC3 ACETYL-COA CARBOXYLASE
AT5G51820

Predicted

Synthetic Lethality

FSW = 0.0313

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT4G21210

Predicted

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FSW = 0.0824

Unknown

ATRP1 (PPDK REGULATORY PROTEIN) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE
AT1G17160

Predicted

blue native page

FSW = 0.0976

Unknown

PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN
AT3G54670

Predicted

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FSW = 0.0149

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT2G36880

Predicted

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FSW = 0.0423

Unknown

MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT5G63680

Predicted

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FSW = 0.0250

Unknown

PYRUVATE KINASE PUTATIVE
AT1G18270

Predicted

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FSW = 0.0585

Unknown

KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN
AT2G47510

Predicted

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FSW = 0.0142

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G20420

Predicted

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FSW = 0.0167

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT1G67710

Predicted

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FSW = 0.0539

Unknown

ARR11 (RESPONSE REGULATOR 11) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT2G25600

Predicted

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FSW = 0.0216

Unknown

SPIK (SHAKER POLLEN INWARD K+ CHANNEL) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL/ POTASSIUM CHANNEL
AT1G12244

Predicted

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FSW = 0.0571

Unknown

DNA BINDING / HYDROLASE ACTING ON ESTER BONDS / NUCLEASE/ NUCLEIC ACID BINDING / RECOMBINASE
AT1G76050

Predicted

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FSW = 0.0842

Unknown

PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT2G04560Predicted

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FSW = 0.0549

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G02570

Predicted

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FSW = 0.0267

Unknown

MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) MANNOSE-6-PHOSPHATE ISOMERASE
AT3G18630

Predicted

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FSW = 0.0610

Unknown

URACIL DNA GLYCOSYLASE FAMILY PROTEIN
AT3G23490

Predicted

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FSW = 0.0220

Unknown

CYN (CYANASE) DNA BINDING / CYANATE HYDRATASE/ HYDRO-LYASE
AT4G00560

Predicted

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FSW = 0.0504

Unknown

METHIONINE ADENOSYLTRANSFERASE REGULATORY BETA SUBUNIT-RELATED
AT5G10910

Predicted

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FSW = 0.0229

Unknown

MRAW METHYLASE FAMILY PROTEIN
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.0124

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G59540Predicted

Synthetic Lethality

FSW = 0.0104

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT2G47570

Predicted

Phenotypic Enhancement

FSW = 0.0209

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.0102

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT4G12230

Predicted

two hybrid

FSW = 0.0239

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT2G35390

Predicted

Phylogenetic profile method

FSW = 0.0138

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G44530

Predicted

Phylogenetic profile method

FSW = 0.0564

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454