Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32470 - ( glycine cleavage system H protein mitochondrial putative )
22 Proteins interacs with AT1G32470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0691
| Class C:plastidmitochondrion | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G12900 | PredictedPhenotypic Enhancement | FSW = 0.0301
| Class C:plastid | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0946
| Class C:plastid | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G04640 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0324
| Class C:mitochondrion | LIP2 (LIPOYLTRANSFERASE 2) LIPOYLTRANSFERASE |
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0407
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0423
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0111
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.0447
| Unknown | SELENOPROTEIN-RELATED |
AT4G18800 | PredictedPhenotypic Suppression | FSW = 0.0107
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0518
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0260
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G10610 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17C) |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.0152
| Unknown | UNKNOWN PROTEIN |
AT1G27320 | PredictedPhenotypic Suppression | FSW = 0.0147
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0220
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.0397
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | HDA15 HISTONE DEACETYLASE |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0677
| Unknown | ZINC ION BINDING |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0539
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G59890 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454