Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32480 - ( oxidoreductase/ oxidoreductase acting on the CH-OH group of donors NAD or NADP as acceptor )

10 Proteins interacs with AT1G32480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G74710

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0185

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G03290

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3075

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT1G80560

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6605

Unknown

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT1G31180

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.6909

Unknown

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT5G14200

Predicted

Phylogenetic profile method

FSW = 0.6605

Unknown

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT2G17130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4881

Unknown

IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G09810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3140

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT4G35650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7613

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT4G35260

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5613

Unknown

IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G25155Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0153

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE

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Fasta sequences:

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454