Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G33040 - ( NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) )
48 Proteins interacs with AT1G33040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G20000 | PredictedSynthetic Lethality | FSW = 0.0266
| Unknown | TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL |
AT3G47520 | Predictedsynthetic growth defect | FSW = 0.0335
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G09720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1164
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT1G20630 | PredictedPhenotypic Enhancement | FSW = 0.0575
| Unknown | CAT1 (CATALASE 1) CATALASE |
AT3G63490 | PredictedPhenotypic Enhancement | FSW = 0.0045
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G14930 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
AT1G17880 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationtwo hybridCo-expression | FSW = 0.0247
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
AT1G73230 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT3G13560 | PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.1076
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G27630 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | ACBP5 (ACYL-COA BINDING PROTEIN 5) ACYL-COA BINDING |
AT1G70730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2623
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT2G40360 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G23620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0089
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT2G28910 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G09810 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT4G26910 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT1G57550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.1541
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G73190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1309
| Unknown | TIP31 WATER CHANNEL |
AT3G23890 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0343
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT1G62800 | PredictedSynthetic Lethality | FSW = 0.0438
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G07880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0115
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0741
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G49520 | PredictedSynthetic Lethality | FSW = 0.0393
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G60710 | PredictedAffinity Capture-Western | FSW = 0.2272
| Unknown | ATB2 OXIDOREDUCTASE |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0189
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G34180 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0349
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G24830 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.1064
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G13020 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G26510 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-Westerntwo hybridco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.1464
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT4G30540 | PredictedSynthetic Lethality | FSW = 0.1361
| Unknown | GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN |
AT5G14070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2948
| Unknown | ROXY2 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT5G22480 | PredictedAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.1782
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT5G24840 | PredictedAffinity Capture-Western | FSW = 0.0216
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G46410 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G52200 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0183
| Unknown | UNKNOWN PROTEIN |
AT4G22140 | PredictedSynthetic Lethality | FSW = 0.0090
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G48010 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT5G64240 | PredictedSynthetic Lethality | FSW = 0.0703
| Unknown | ATMC3 (METACASPASE 3) CYSTEINE-TYPE ENDOPEPTIDASE |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0116
| Unknown | H2AXA DNA BINDING |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0104
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G15920 | PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT4G08320 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454