Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G33090 - ( MATE efflux family protein )
26 Proteins interacs with AT1G33090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.1723
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT4G21980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0369
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1684
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT5G36790 | PredictedCo-purification | FSW = 0.0325
| Unknown | PHOSPHOGLYCOLATE PHOSPHATASE PUTATIVE |
AT2G44350 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT4G26970 | Predictedco-fractionationCo-fractionation | FSW = 0.1237
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.1366
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.0804
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.0670
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G23900 | PredictedAffinity Capture-Western | FSW = 0.0539
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0529
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinterologs mappingSynthetic Rescue | FSW = 0.2113
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.1641
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-Westerninterologs mappingSynthetic RescueAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.1555
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT3G54300 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT3G28730 | Predictedtwo hybridtwo hybrid | FSW = 0.0063
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G11530 | PredictedAffinity Capture-Western | FSW = 0.2149
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.1221
| Unknown | UNKNOWN PROTEIN |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0796
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G09630 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1370
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G74320 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | CHOLINE KINASE PUTATIVE |
AT2G35390 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0732
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.1287
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1280
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454