Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G34065 - ( SAMC2 (S-adenosylmethionine carrier 2) binding )
43 Proteins interacs with AT1G34065Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G39460 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0580
| Class C:mitochondrion | SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1) S-ADENOSYLMETHIONINE TRANSMEMBRANE TRANSPORTER/ BINDING |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.1991
| Class C:mitochondrion | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G62150 | PredictedAffinity Capture-MS | FSW = 0.1153
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingAffinity Capture-MS | FSW = 0.3735
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18080 | PredictedGene fusion method | FSW = 0.0205
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2874
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.1846
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G01350 | PredictedAffinity Capture-MS | FSW = 0.1130
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1590
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.2056
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.1331
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT5G17310 | PredictedAffinity Capture-MS | FSW = 0.1296
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2244
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2575
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G07640 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.2239
| Unknown | BINDING |
AT4G33720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0895
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.1195
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.1566
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G12530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2476
| Unknown | PSF2 |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0352
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G20920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2404
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0729
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0957
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1849
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1620
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2745
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.2363
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | EXORIBONUCLEASE-RELATED |
AT2G31260 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.1319
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.2256
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G57550 | PredictedAffinity Capture-MS | FSW = 0.1005
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.1566
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.1800
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.2876
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.1805
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT3G25100 | PredictedSynthetic LethalityCo-expression | FSW = 0.0093
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454