Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G34150 - ( tRNA pseudouridine synthase family protein )
48 Proteins interacs with AT1G34150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G64790 | PredictedPhenotypic Suppression | FSW = 0.0685
| Unknown | BINDING |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.1398
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G18640 | PredictedPhenotypic Enhancement | FSW = 0.1361
| Unknown | PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0164
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.1529
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G63110 | PredictedPhenotypic Suppression | FSW = 0.0793
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT2G45490 | Predictedbiochemical | FSW = 0.0063
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.0648
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.0548
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.1800
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G02680 | PredictedPhenotypic Suppression | FSW = 0.0514
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1344
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0568
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedPhenotypic Suppression | FSW = 0.0768
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G13940 | PredictedPhenotypic Suppression | FSW = 0.0473
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G15430 | PredictedPhenotypic Suppression | FSW = 0.0851
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G08630 | PredictedPhenotypic Enhancement | FSW = 0.1152
| Unknown | DDT DOMAIN-CONTAINING PROTEIN |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.0569
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G06210 | PredictedPhenotypic Suppression | FSW = 0.0725
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT1G59900 | PredictedPhenotypic Suppression | FSW = 0.1330
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.0960
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G07880 | PredictedPhenotypic Enhancement | FSW = 0.0377
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.1213
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G32130 | PredictedPhenotypic Suppression | FSW = 0.0476
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.1598
| Unknown | NUCLEOTIDE BINDING |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1518
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G67190 | PredictedSynthetic Lethality | FSW = 0.1038
| Unknown | F-BOX FAMILY PROTEIN |
AT2G02760 | PredictedPhenotypic Suppression | FSW = 0.1249
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G37840 | Predictedbiochemical | FSW = 0.0091
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.0665
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.1554
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13680 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G22840 | Predictedbiochemical | FSW = 0.0107
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.1379
| Unknown | BINDING |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.1921
| Unknown | BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0834
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G49510 | PredictedPhenotypic Suppression | FSW = 0.0938
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G50320 | PredictedPhenotypic Enhancement | FSW = 0.1968
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT1G79730 | PredictedPhenotypic Suppression | FSW = 0.1580
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0917
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.1179
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G46460 | PredictedSynthetic Lethality | FSW = 0.0463
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT1G64750 | PredictedSynthetic Lethality | FSW = 0.0212
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT1G79890 | PredictedSynthetic Lethality | FSW = 0.1117
| Unknown | HELICASE-RELATED |
AT5G16850 | PredictedSynthetic Lethality | FSW = 0.0277
| Unknown | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE |
AT1G03150 | PredictedSynthetic Lethality | FSW = 0.0157
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
AT4G25120 | PredictedSynthetic Lethality | FSW = 0.0779
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT2G43650 | Predictedinteraction predictiontwo hybrid | FSW = 0.0216
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454