Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G34210 - ( SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) kinase )
6 Proteins interacs with AT1G34210| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G71830
   | Experimentalfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0936
| Class A:plasma membraneClass B:unclearendoplasmic reticulumClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
| AT1G25570
| PredictedGene fusion methodCo-expression | FSW = 0.0556
| Class C:plasma membrane | LEUCINE-RICH REPEAT PROTEIN-RELATED |
| AT3G13770
| PredictedGene fusion method | FSW = 0.3036
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT5G27330
| PredictedGene fusion method | FSW = 0.2882
| Unknown | LOCATED IN ENDOPLASMIC RETICULUM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PREFOLDIN (INTERPROIPR009053) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G051301) HAS 110457 BLAST HITS TO 56483 PROTEINS IN 2051 SPECIES ARCHAE - 1653 BACTERIA - 15111 METAZOA - 52441 FUNGI - 7858 PLANTS - 4309 VIRUSES - 584 OTHER EUKARYOTES - 28501 (SOURCE NCBI BLINK) |
| AT2G25490
| PredictedGene fusion method | FSW = 0.0966
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G21810
| PredictedGene fusion method | FSW = 0.3036
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF869 PLANT (INTERPROIPR008587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G775802) HAS 62951 BLAST HITS TO 33517 PROTEINS IN 1593 SPECIES ARCHAE - 800 BACTERIA - 6354 METAZOA - 33836 FUNGI - 4765 PLANTS - 2651 VIRUSES - 311 OTHER EUKARYOTES - 14234 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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