Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G34370 - ( STOP1 (sensitive to proton rhizotoxicity 1) nucleic acid binding / transcription factor/ zinc ion binding )
29 Proteins interacs with AT1G34370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01760 | Experimentaltwo hybrid | FSW = 0.0390
| Unknown | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G37040 | PredictedGene fusion method | FSW = 0.0714
| Unknown | MAP1D (METHIONINE AMINOPEPTIDASE 1D) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT5G23710 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G52540 | PredictedGene fusion method | FSW = 0.1000
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G44680 | Predictedtwo hybrid | FSW = 0.0152
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G20890 | PredictedGene fusion method | FSW = 0.1818
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G08350 | Predictedtwo hybrid | FSW = 0.0295
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT1G03910 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
AT2G12550 | Predictedtwo hybrid | FSW = 0.0496
| Unknown | UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN |
AT2G30280 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | UNKNOWN PROTEIN |
AT2G31510 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | IBR DOMAIN-CONTAINING PROTEIN / ARIADNE-LIKE PROTEIN ARI7 (ARI7) |
AT2G47110 | Predictedtwo hybrid | FSW = 0.0840
| Unknown | UBQ6 PROTEIN BINDING |
AT4G18905 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G27650 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | PEL1 (PELOTA) TRANSLATION RELEASE FACTOR |
AT4G30400 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G02040 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | PRA1A1 (PRENYLATED RAB ACCEPTOR 1A1) |
AT5G14580 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE PUTATIVE |
AT5G37055 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | SEF (SERRATED LEAVES AND EARLY FLOWERING) |
AT5G41880 | Predictedtwo hybrid | FSW = 0.0138
| Unknown | POLA3 DNA PRIMASE |
AT5G49010 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT1G63660 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G40700 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
AT5G11010 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
AT2G16970 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | MEE15 (MATERNAL EFFECT EMBRYO ARREST 15) TETRACYCLINE TRANSPORTER |
AT1G13290 | Predictedtwo hybrid | FSW = 0.0779
| Unknown | DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) TRANSCRIPTION FACTOR |
AT5G11900 | Predictedtwo hybrid | FSW = 0.0627
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT3G47940 | PredictedGene fusion method | FSW = 0.0295
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G40010 | PredictedGene fusion method | FSW = 0.0714
| Unknown | SNRK27 (SNF1-RELATED PROTEIN KINASE 27) KINASE |
AT4G23920 | PredictedGene fusion method | FSW = 0.0238
| Unknown | UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454