Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G35160 - ( GF14 PHI (GF14 PROTEIN PHI CHAIN) protein binding / protein phosphorylated amino acid binding )
46 Proteins interacs with AT1G35160| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G78300
   | Experimentalpull down | FSW = 0.0913
| Class A:plasma membranenucleuscytosolcytoskeletonClass B:vacuoleperoxisomeClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT4G30190
| Experimentaltwo hybrid | FSW = 0.0360
| Class A:plasma membraneClass B:vacuolenucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | AHA2 ATPASE/ HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM |
| AT3G02520
| Experimentalpull down | FSW = 0.4431
| Class A:plasma membraneClass B:plastidnucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G16050
| Experimental | FSW = 0.4024
| Class A:plasma membraneClass B:nucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT2G32950
| Experimentalpull down | FSW = 0.0141
| Class A:nucleuscytosolClass B:plasma membranecytoskeleton | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G11260
| Experimental | FSW = 0.0660
| Class A:nucleusClass B:plasma membranecytosolcytoskeletonClass D:plastid (p = 0.78) | HY5 (ELONGATED HYPOCOTYL 5) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G41630
| Experimentalpull down | FSW = 0.0095
| Class A:nucleusClass B:plasma membranecytosolcytoskeletonClass D:cytosol (p = 0.67) | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
| AT1G55520
| Experimentalpull down | FSW = 0.0169
| Class A:nucleusClass B:plasma membranecytosolcytoskeleton | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT1G75080
| Experimental | FSW = 0.1387
| Class D:plastid (p = 0.78) | BZR1 (BRASSINAZOLE-RESISTANT 1) DNA BINDING / TRANSCRIPTION REGULATOR/ TRANSCRIPTION REPRESSOR |
| AT4G26070
| Experimentalpull down | FSW = 0.0257
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
| AT5G10450
| PredictedPhylogenetic profile method | FSW = 0.1045
| Class C:plasma membranenucleuscytosol | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT2G42590
| PredictedPhylogenetic profile method | FSW = 0.1252
| Class C:plasma membranenucleuscytosol | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT4G09000
| PredictedPhylogenetic profile method | FSW = 0.3414
| Class C:plasma membranenucleus | 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1) |
| AT5G38480
| PredictedPhylogenetic profile method | FSW = 0.2408
| Class C:plasma membranecytosol | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G22630
| PredictedAffinity Capture-MS | FSW = 0.0084
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G08530
| Predictedinterologs mapping | FSW = 0.0229
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT1G22300
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1918
| Class C:plasma membrane | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G65040
| PredictedAffinity Capture-MS | FSW = 0.0131
| Class C:plasma membrane | PROTEIN BINDING / ZINC ION BINDING |
| AT4G05190
| PredictedSynthetic Lethality | FSW = 0.1231
| Class C:nucleuscytoskeleton | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
| AT2G06510
| Predictedsynthetic growth defect | FSW = 0.0193
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
| AT5G65430
| PredictedPhylogenetic profile method | FSW = 0.0912
| Class C:nucleus | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G08720
| PredictedSynthetic Lethality | FSW = 0.0299
| Class C:nucleus | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
| AT2G24490
| Predictedsynthetic growth defect | FSW = 0.0196
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
| AT3G47690
| PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0506
| Class C:cytoskeleton | ATEB1A MICROTUBULE BINDING |
| AT2G35040
| PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN |
| AT1G80070
| Predictedtwo hybridGene neighbors method | FSW = 0.0134
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT2G36200
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0911
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT1G31970
| PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G31810
| PredictedAffinity Capture-MS | FSW = 0.0297
| Unknown | ACTIN BINDING |
| AT3G48780
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0084
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
| AT2G29400
| PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G09020
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0394
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
| AT3G01090
| PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
| AT5G35980
| PredictedAffinity Capture-Western | FSW = 0.0447
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G67100
| Predictedsynthetic growth defect | FSW = 0.0296
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
| AT1G67320
| Predictedsynthetic growth defect | FSW = 0.0502
| Unknown | DNA PRIMASE LARGE SUBUNIT FAMILY |
| AT1G07270
| Predictedsynthetic growth defect | FSW = 0.0193
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
| AT1G06720
| Predictedsynthetic growth defect | FSW = 0.0144
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT5G49510
| PredictedSynthetic Lethality | FSW = 0.0402
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
| AT5G23290
| PredictedSynthetic Lethality | FSW = 0.0405
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
| AT3G22480
| PredictedSynthetic Lethality | FSW = 0.0373
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
| AT1G08780
| PredictedSynthetic Lethality | FSW = 0.0491
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
| AT1G02690
| Predictedtwo hybrid | FSW = 0.0060
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT1G78220
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4173
| Unknown | GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G34760
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3130
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G26480
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2817
| Unknown | GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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