Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G35670 - ( ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) calmodulin-dependent protein kinase/ kinase )

43 Proteins interacs with AT1G35670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G27850

Experimental

two hybrid

FSW = 0.0064

Class A:

plasma membrane

Class B:

vacuole

nucleus

cytosol

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT5G59880

Experimental

two hybrid

FSW = 0.0183

Class A:

plasma membrane

Class B:

nucleus

mitochondrion

cytosol

Class D:

cytosol (p = 0.67)

ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) ACTIN BINDING
AT1G23080

Experimental

two hybrid

FSW = 0.0851

Class A:

plasma membrane

Class B:

nucleus

cytosol

PIN7 (PIN-FORMED 7) AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ AUXINHYDROGEN SYMPORTER/ TRANSPORTER
AT1G56280

Experimental

two hybrid

protein kinase assay

pull down

two hybrid

Reconstituted Complex

biochemical

immunolocalization

in vitro

FSW = 0.0730

Class A:

nucleus

Class B:

plasma membrane

peroxisome

cytosol

ATDI19
AT4G21670

Experimental

two hybrid

FSW = 0.0248

Class A:

nucleus

Class B:

plasma membrane

cytosol

CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) DOUBLE-STRANDED RNA BINDING / NUCLEOTIDE PHOSPHATASE
AT1G25550

Experimental

two hybrid

FSW = 0.0696

Class A:

nucleus

Class B:

plasma membrane

cytosol

MYB FAMILY TRANSCRIPTION FACTOR
AT3G22530

Experimental

two hybrid

FSW = 0.1277

Class B:

vacuole

plasma membrane

nucleus

cytosol

Class D:

cytosol (p = 0.67)

UNKNOWN PROTEIN
AT1G02280

Experimental

two hybrid

FSW = 0.0479

Class B:

plastid

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33) GTP BINDING / GTPASE/ PROTEIN BINDING
AT2G20890

Experimental

two hybrid

FSW = 0.0696

Class B:

plastid

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

PSB29
AT1G74470

Experimental

two hybrid

FSW = 0.0870

Class B:

plastid

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

GERANYLGERANYL REDUCTASE
AT5G41670

Experimental

two hybrid

FSW = 0.0205

Class B:

plasma membrane

nucleus

mitochondrion

cytosol

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT5G27760

Experimental

two hybrid

FSW = 0.0870

Class B:

plasma membrane

nucleus

mitochondrion

cytosol

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

HYPOXIA-RESPONSIVE FAMILY PROTEIN
AT1G65290

Experimental

two hybrid

FSW = 0.0116

Class B:

plasma membrane

nucleus

mitochondrion

cytosol

Class D:

plastid (p = 0.78)

MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT2G01950

Experimental

phage display

FSW = 0.0052

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT1G52740

Experimental

two hybrid

FSW = 0.0024

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT3G26510

Experimental

two hybrid

FSW = 0.1277

Unknown

OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN
AT5G52550

Experimental

two hybrid

FSW = 0.0870

Unknown

UNKNOWN PROTEIN
AT3G48360

Experimental

two hybrid

FSW = 0.0696

Unknown

BT2 (BTB AND TAZ DOMAIN PROTEIN 2) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT4G14830

Experimental

two hybrid

FSW = 0.1277

Unknown

UNKNOWN PROTEIN
AT1G14687

Experimental

two hybrid

FSW = 0.0580

Unknown

ATHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32) DNA BINDING / TRANSCRIPTION FACTOR
AT1G65650

Experimental

two hybrid

FSW = 0.0290

Unknown

UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT2G32750

Experimental

two hybrid

FSW = 0.0696

Unknown

EXOSTOSIN FAMILY PROTEIN
AT2G22910

Experimental

two hybrid

FSW = 0.1094

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN / AMINO ACID KINASE FAMILY PROTEIN
AT5G07240

Experimental

two hybrid

FSW = 0.0870

Unknown

IQD24 (IQ-DOMAIN 24) CALMODULIN BINDING
AT4G23650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5208

Class C:

plasma membrane

nucleus

cytosol

CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G51850

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6098

Class C:

plasma membrane

CPK13 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G74740

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5000

Class C:

plasma membrane

CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT3G57530

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.4464

Class C:

plasma membrane

CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT5G12480

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2137

Class C:

plasma membrane

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G19450

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4310

Class C:

plasma membrane

CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G66210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5682

Class C:

plasma membrane

CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G17890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6098

Class C:

plasma membrane

CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G04720

Predicted

Phylogenetic profile method

FSW = 0.2358

Class C:

plasma membrane

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G61950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5682

Class C:

plasma membrane

CPK19 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G09570

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4751

Class C:

nucleus

cytosol

CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT2G41860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4808

Unknown

CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G12180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6250

Unknown

CPK17 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G19360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3968

Unknown

CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G36070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3676

Unknown

CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G50700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5814

Unknown

CPK33 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G23580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6168

Unknown

CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G04695

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.2016

Unknown

CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G04700

Predicted

Phylogenetic profile method

FSW = 0.1880

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454