Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G36340 - ( UBC31 (ubiquitin-conjugating enzyme 31) small conjugating protein ligase/ ubiquitin-protein ligase )

28 Proteins interacs with AT1G36340
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G33010

Predicted

two hybrid

FSW = 0.0298

Unknown

ATGLDP1 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 1) CATALYTIC/ GLYCINE DEHYDROGENASE (DECARBOXYLATING)/ PYRIDOXAL PHOSPHATE BINDING
AT1G64230

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4065

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G16890

Predicted

Phylogenetic profile method

FSW = 0.4294

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT4G32830

Predicted

Affinity Capture-MS

FSW = 0.0450

Unknown

ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G14170

Predicted

two hybrid

FSW = 0.0081

Unknown

CHC1
AT5G22220

Predicted

Phenotypic Enhancement

FSW = 0.0094

Unknown

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G44950

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0230

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G13550

Predicted

Phylogenetic profile method

FSW = 0.3199

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G53360

Predicted

in vivo

FSW = 0.0221

Unknown

SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN
AT4G34370

Predicted

two hybrid

two hybrid

in vitro

in vivo

two hybrid

two hybrid

in vivo

in vitro

FSW = 0.0281

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT3G14250

Predicted

in vivo

two hybrid

FSW = 0.0275

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G18110

Predicted

Affinity Capture-Western

FSW = 0.0645

Unknown

NCBP (NOVEL CAP-BINDING PROTEIN) RNA BINDING / TRANSLATION INITIATION FACTOR
AT3G08700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6017

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G56150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5102

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT3G08690

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5899

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT5G41700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1941

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G25760

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6401

Unknown

PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G16740

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1583

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT1G78870

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.4055

Unknown

UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G55380

Predicted

Phylogenetic profile method

FSW = 0.3939

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT5G62540

Predicted

Phylogenetic profile method

FSW = 0.5983

Unknown

UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT3G46460

Predicted

Phylogenetic profile method

FSW = 0.4462

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT5G53300

Predicted

Phylogenetic profile method

FSW = 0.5099

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT5G42990

Predicted

Phylogenetic profile method

FSW = 0.5689

Unknown

UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT1G14400

Predicted

Phylogenetic profile method

FSW = 0.1756

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT2G02760

Predicted

Phylogenetic profile method

FSW = 0.1496

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT4G27960

Predicted

Phylogenetic profile method

FSW = 0.4121

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT2G35635Predicted

Gene fusion method

FSW = 0.1125

Unknown

UBQ7 PROTEIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454