Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G37130 - ( NIA2 (NITRATE REDUCTASE 2) nitrate reductase (NADH)/ nitrate reductase )
12 Proteins interacs with AT1G37130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimentaltwo hybrid | FSW = 0.0963
| Class A:vacuoleplasma membraneClass B:peroxisomenucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G10450 | Experimentaltwo hybrid | FSW = 0.1042
| Class A:plasma membraneClass B:vacuoleplastidperoxisomenucleuscytosolClass D:cytosol (p = 0.67) | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G09000 | Experimentaltwo hybrid | FSW = 0.4354
| Class A:plasma membraneClass B:vacuoleplastidnucleusClass D:cytosol (p = 0.67) | 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1) |
AT2G42590 | Experimentaltwo hybrid | FSW = 0.1434
| Class A:plasma membraneClass B:vacuoleperoxisomenucleuscytosolClass D:unclear (p = 0.09)cytosol (p = 0.67) | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G38480 | Experimentaltwo hybrid | FSW = 0.1847
| Class A:plasma membraneClass B:vacuoleperoxisomecytosolClass D:cytosol (p = 0.67) | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G65430 | Experimentaltwo hybrid | FSW = 0.0903
| Class B:vacuoleplastidplasma membranenucleusClass D:cytosol (p = 0.67) | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G78220 | Experimentaltwo hybrid | FSW = 0.5541
| Unknown | GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G37210 | Experimentalprotein complementation assay | FSW = 0.0618
| Unknown | ENCODES A PROTEIN OF UNKNOWN FUNCTION IT HAS BEEN CRYSTALLIZED AND SHOWN TO BE STRUCTURALLY ALMOST IDENTICAL TO THE PROTEIN ENCODED BY AT5G11950 |
AT4G10040 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0896
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT5G48810 | Predictedin vitroin vitro | FSW = 0.1170
| Unknown | CB5-D (CYTOCHROME B5 ISOFORM D) HEME BINDING |
AT4G24710 | Predictedtwo hybrid | FSW = 0.0314
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G77760 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4706
| Unknown | NIA1 (NITRATE REDUCTASE 1) NITRATE REDUCTASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454