Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G42970 - ( GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase )

5 Proteins interacs with AT1G42970
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G42580

Experimental

phage display

FSW = 0.0229

Unknown

TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING
AT3G26650

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0504

Class C:

plastid

GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING
AT3G53170

Predicted

Gene fusion method

FSW = 0.1498

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN GLUTAMINE BIOSYNTHETIC PROCESS LOCATED IN NUCLEOLUS EXPRESSED IN 9 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G487301) HAS 17188 BLAST HITS TO 5538 PROTEINS IN 167 SPECIES ARCHAE - 1 BACTERIA - 16 METAZOA - 307 FUNGI - 211 PLANTS - 16025 VIRUSES - 0 OTHER EUKARYOTES - 628 (SOURCE NCBI BLINK)
AT1G04980

Predicted

Gene fusion method

FSW = 0.2133

Unknown

ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE
AT4G33260

Predicted

Gene fusion method

FSW = 0.1109

Unknown

CDC202 SIGNAL TRANSDUCER

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454