Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G43670 - ( fructose-16-bisphosphatase putative / D-fructose-16-bisphosphate 1-phosphohydrolase putative / FBPase putative )
17 Proteins interacs with AT1G43670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42980 | Experimentalenzymatic study | FSW = 0.0154
| Class A:plasma membranecytosolClass B:plastidperoxisomemitochondrionextracellularClass D:cytosol (p = 0.67) | ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT3G09840 | PredictedAffinity Capture-MS | FSW = 0.0887
| Class C:plasma membranecytosol | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT5G64380 | PredictedPhylogenetic profile method | FSW = 0.2857
| Unknown | FRUCTOSE-16-BISPHOSPHATASE FAMILY PROTEIN |
AT5G53480 | Predictedinteraction predictiontwo hybrid | FSW = 0.0205
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT3G54050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2143
| Unknown | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
AT5G56290 | Predictedco-fractionationCo-fractionation | FSW = 0.0138
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT3G14080 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1318
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G54840 | Predictedinteraction predictiontwo hybrid | FSW = 0.0388
| Unknown | SGP1 GTP BINDING |
AT3G06720 | Predictedinteraction predictiontwo hybrid | FSW = 0.0222
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0550
| Unknown | SGP2 GTP BINDING |
AT5G03340 | PredictedAffinity Capture-MS | FSW = 0.0870
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G09390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0732
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G66630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2288
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
AT1G61010 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0906
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT4G04210 | PredictedAffinity Capture-MS | FSW = 0.0769
| Unknown | PUX4 PROTEIN BINDING |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454