Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G43860 - ( transcription factor )

19 Proteins interacs with AT1G43860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G16640

Predicted

Affinity Capture-MS

FSW = 0.0870

Unknown

TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
AT3G62870

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0097

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.0351

Unknown

RNA BINDING
AT4G08690

Predicted

Affinity Capture-MS

FSW = 0.0635

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT2G27500

Predicted

Affinity Capture-MS

FSW = 0.1600

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0203

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT3G52250

Predicted

Affinity Capture-MS

FSW = 0.0232

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G55620

Predicted

Synthetic Rescue

FSW = 0.0245

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G30810

Predicted

Affinity Capture-MS

FSW = 0.0721

Unknown

TRANSCRIPTION FACTOR
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0164

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G08880

Predicted

Affinity Capture-MS

FSW = 0.0071

Unknown

H2AXA DNA BINDING
AT1G25520

Predicted

two hybrid

two hybrid

FSW = 0.1565

Unknown

UNKNOWN PROTEIN
AT3G05760

Predicted

Affinity Capture-MS

FSW = 0.0637

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G74250

Predicted

Affinity Capture-MS

FSW = 0.1065

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT3G22980

Predicted

Affinity Capture-MS

FSW = 0.0775

Unknown

ELONGATION FACTOR TU FAMILY PROTEIN
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0136

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G05540

Predicted

Affinity Capture-MS

FSW = 0.0544

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454