Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G43900 - ( protein phosphatase 2C putative / PP2C putative )
20 Proteins interacs with AT1G43900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G30710 | PredictedSynthetic Lethality | FSW = 0.0527
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G08530 | Predictedsynthetic growth defect | FSW = 0.0086
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G12520 | PredictedSynthetic Lethality | FSW = 0.0316
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT3G51460 | PredictedSynthetic Lethality | FSW = 0.0988
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G26150 | PredictedSynthetic Lethality | FSW = 0.1131
| Unknown | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0212
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT5G12940 | PredictedGene fusion method | FSW = 0.0696
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G26070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0883
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT1G26830 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G12470 | PredictedAffinity Capture-MS | FSW = 0.0874
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT2G22425 | PredictedAffinity Capture-Western | FSW = 0.0166
| Unknown | PEPTIDASE |
AT2G43790 | Predictedbiochemicalsynthetic growth defectSynthetic Rescue | FSW = 0.0316
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT1G27320 | Predictedinterologs mappinginterologs mapping | FSW = 0.0401
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0737
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0383
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0417
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0458
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G24320 | PredictedSynthetic Lethality | FSW = 0.0556
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
AT1G09460 | PredictedSynthetic Lethality | FSW = 0.0847
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454