Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G44820 - ( aminoacylase putative / N-acyl-L-amino-acid amidohydrolase putative )
28 Proteins interacs with AT1G44820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G45780 | Predictedtwo hybrid | FSW = 0.0208
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G56290 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT3G66656 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | AGL91 TRANSCRIPTION FACTOR |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G14610 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT5G20950 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | GLYCOSYL HYDROLASE FAMILY 3 PROTEIN |
AT5G55160 | PredictedAffinity Capture-MS | FSW = 0.1582
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G06830 | PredictedAffinity Capture-MS | FSW = 0.1008
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G79910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0611
| Unknown | UNKNOWN PROTEIN |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0840
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G22040 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.1603
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0306
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G34180 | PredictedAffinity Capture-Western | FSW = 0.0397
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G63150 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0497
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
AT4G12790 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ATP-BINDING FAMILY PROTEIN |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G30530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1589
| Unknown | DEFENSE-RELATED PROTEIN PUTATIVE |
AT5G13400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0857
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT2G28210 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | ATACA2 (ALPHA CARBONIC ANHYDRASE 2) CARBONATE DEHYDRATASE/ ZINC ION BINDING |
AT1G44180 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0633
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT4G38220 | PredictedPhylogenetic profile method | FSW = 0.0938
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454