Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G45000 - ( 26S proteasome regulatory complex subunit p42D putative )
40 Proteins interacs with AT1G45000| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G25490
   | Experimentalbiochemical | FSW = 0.2807
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G07940 | Predictedtwo hybridGene neighbors method | FSW = 0.0072
| Class C:plasma membranenucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G22630
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3507
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G20140
| PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6215
| Class C:plasma membrane | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
| AT4G38600
| PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0508
| Class C:plasma membrane | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
| AT1G04810
| PredictedAffinity Capture-MS | FSW = 0.5209
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G20580
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3153
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT5G19990
| PredictedAffinity Capture-MSco-fractionationCo-fractionationtwo hybridPhylogenetic profile method | FSW = 0.3760
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT1G53750
| PredictedAffinity Capture-MSAffinity Capture-MSGene neighbors methodPhylogenetic profile method | FSW = 0.3819
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT4G24820
| PredictedAffinity Capture-MSCo-expression | FSW = 0.5241
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
| AT1G09100
| Predictedtwo hybridtwo hybridGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6886
| Class C:plasma membrane | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
| AT1G20200
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4723
| Class C:plasma membrane | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
| AT2G27020
| Predictedtwo hybridCo-expression | FSW = 0.1452
| Class C:nucleus | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G05530
| Predictedtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.5529
| Class C:nucleus | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
| AT4G10670
| PredictedAffinity Capture-Western | FSW = 0.0241
| Class C:nucleus | GTC2 |
| AT5G66140
| Predictedtwo hybridCo-expression | FSW = 0.0945
| Unknown | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G16470
| Predictedtwo hybridGene neighbors methodCo-expression | FSW = 0.1874
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G16190
| PredictedAffinity Capture-MSAffinity Capture-WesternCo-purificationPhenotypic Enhancement | FSW = 0.3093
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G58290
| Predictedtwo hybridAffinity Capture-MSco-fractionationCo-fractionationCo-purificationtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.4456
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT1G64750
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3845
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT5G23540
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4456
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT5G09900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4163
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
| AT4G38630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1661
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT4G19006
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4795
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT3G11270
| PredictedAffinity Capture-MS | FSW = 0.4748
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT1G64520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4354
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
| AT1G51710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2532
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G29150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3335
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G80410
| PredictedAffinity Capture-MS | FSW = 0.0628
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT3G27000
| PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT2G16950
| PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT1G50370
| PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0219
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
| AT1G15420
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0273
| Unknown | UNKNOWN PROTEIN |
| AT1G09580
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT5G57950
| Predictedtwo hybrid | FSW = 0.1512
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT1G56590
| Predictedtwo hybrid | FSW = 0.0481
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT5G43010
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6501
| Unknown | RPT4A ATPASE |
| AT1G53780
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3294
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT5G20000
| PredictedPhylogenetic profile method | FSW = 0.2407
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
| AT4G29040
| PredictedPhylogenetic profile method | FSW = 0.4935
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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