Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G45145 - ( ATTRX5 oxidoreductase acting on sulfur group of donors disulfide as acceptor )
45 Proteins interacs with AT1G45145Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42980 | PredictedShared biological functionGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0357
| Class C:plasma membraneperoxisome | ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT2G17360 | PredictedSynthetic Rescue | FSW = 0.0272
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G44690 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Westerntwo hybrid | FSW = 0.1156
| Class C:plasma membrane | ARAC9 GTP BINDING |
AT1G77210 | PredictedAffinity Capture-MS | FSW = 0.0125
| Class C:plasma membrane | SUGAR TRANSPORTER PUTATIVE |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0714
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G33650 | PredictedPhenotypic Enhancement | FSW = 0.0895
| Class C:peroxisome | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G07180 | PredictedPhenotypic Suppression | FSW = 0.0293
| Class C:peroxisome | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0612
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G20260 | PredictedPhenotypic Suppression | FSW = 0.0814
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.1350
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0534
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G18870 | Predictedtwo hybrid | FSW = 0.0068
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT5G25400 | PredictedPhenotypic Enhancement | FSW = 0.0785
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT2G36170 | PredictedPhenotypic Suppression | FSW = 0.0460
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G21700 | PredictedSynthetic Lethality | FSW = 0.0590
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G52250 | PredictedPhenotypic Enhancement | FSW = 0.0696
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0521
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1736
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.1141
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.1080
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G52300 | PredictedPhenotypic Enhancement | FSW = 0.0620
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G13900 | PredictedSynthetic Rescue | FSW = 0.0390
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT2G29540 | PredictedSynthetic Rescue | FSW = 0.0785
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G51030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2308
| Unknown | ATTRX1 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G19730 | PredictedPhylogenetic profile method | FSW = 0.0807
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G13090 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defectsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.1541
| Unknown | XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE |
AT1G09270 | PredictedPhenotypic Enhancement | FSW = 0.0142
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G66590 | Predictedtwo hybrid | FSW = 0.1300
| Unknown | COX19 FAMILY PROTEIN |
AT1G68530 | PredictedPhenotypic Suppression | FSW = 0.0516
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G78770 | PredictedSynthetic Rescue | FSW = 0.0681
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G01600 | PredictedPhenotypic Enhancement | FSW = 0.1211
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G31020 | Predictedtwo hybridReconstituted Complextwo hybridAffinity Capture-Western | FSW = 0.0265
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1496
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G29580 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1020
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0923
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G11500 | PredictedSynthetic Rescue | FSW = 0.2310
| Unknown | UNKNOWN PROTEIN |
AT5G14180 | PredictedPhenotypic Enhancement | FSW = 0.0607
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.1543
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.1478
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.1490
| Unknown | YIPPEE FAMILY PROTEIN |
AT4G13020 | PredictedPhenotypic Enhancement | FSW = 0.1020
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G23895 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.1420
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G59730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0356
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G11530 | PredictedPhylogenetic profile method | FSW = 0.0245
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454