Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G47230 - ( cyclin putative )
31 Proteins interacs with AT1G47230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assay | FSW = 0.1463
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G28980 | Experimentalprotein complementation assay | FSW = 0.3756
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT5G48820 | Experimentalprotein complementation assay | FSW = 0.2395
| Unknown | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G32710 | Experimentalprotein complementation assay | FSW = 0.3874
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G23430 | Experimentalprotein complementation assay | FSW = 0.2814
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G18040 | Experimentalprotein complementation assay | FSW = 0.2280
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT3G50630 | Experimentalprotein complementation assay | FSW = 0.2822
| Unknown | KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING |
AT1G73690 | Experimentalprotein complementation assay | FSW = 0.1396
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G27960 | Experimentalprotein complementation assay | FSW = 0.2986
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT4G22910 | Experimentaltwo hybrid | FSW = 0.0773
| Unknown | FZR2 (FIZZY-RELATED 2) SIGNAL TRANSDUCER |
AT5G13840 | Experimentaltwo hybrid | FSW = 0.0924
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.2344
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.4289
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assay | FSW = 0.3409
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G63610 | Experimentalprotein complementation assay | FSW = 0.0696
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G67580 | Experimentalprotein complementation assay | FSW = 0.1428
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G27970 | Experimentalprotein complementation assay | FSW = 0.1807
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G56310 | Predictedtwo hybrid | FSW = 0.0514
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT1G47210 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2284
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G43190 | Predictedtwo hybridCo-expression | FSW = 0.0643
| Unknown | POLYPYRIMIDINE TRACT-BINDING PROTEIN PUTATIVE / HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE |
AT5G40820 | PredictedPhenotypic Suppression | FSW = 0.0087
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G06150 | PredictedPhenotypic SuppressionPhenotypic EnhancementEnriched domain pair | FSW = 0.0632
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G50900 | PredictedPhenotypic Enhancement | FSW = 0.0514
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G56150 | PredictedPhenotypic Suppression | FSW = 0.0102
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT3G61150 | Predictedtwo hybrid | FSW = 0.0396
| Unknown | HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G44420 | Predictedtwo hybrid | FSW = 0.0261
| Unknown | PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN |
AT5G37290 | Predictedtwo hybridCo-expression | FSW = 0.0314
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G62600 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | TRANSPORTIN-SR-RELATED |
AT5G43080 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3527
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G25380 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2927
| Unknown | CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G26800 | PredictedGene fusion method | FSW = 0.0294
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454